Detail information of GWHGAAZE022128


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009780619.10PREDICTED: cullin-1 isoform X2 [Nicotiana sylvestris]
Swissprottr|Q94AH6|CUL1_ARATH0Cullin-1
trEMBLtr|A0A067KUU7|A0A067KUU7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP39996.1}
TAIR10AT4G02570.40cullin 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6730435767314333-
GWHAAZE00000006mRNA6730435767314333-
GWHAAZE00000006exon6731423367314333-
GWHAAZE00000006exon6731400267314101-
GWHAAZE00000006exon6731098367311168-
GWHAAZE00000006exon6731059167310638-
GWHAAZE00000006exon6731030467310507-
GWHAAZE00000006exon6731014467310221-
GWHAAZE00000006exon6730997767310066-
GWHAAZE00000006exon6730980867309888-
GWHAAZE00000006exon6730961967309681-
GWHAAZE00000006exon6730763367307668-
GWHAAZE00000006exon6730746367307549-
GWHAAZE00000006exon6730723767307386-
GWHAAZE00000006exon6730709767307152-
GWHAAZE00000006exon6730689767307017-
GWHAAZE00000006exon6730664967306810-
GWHAAZE00000006exon6730599267306135-
GWHAAZE00000006exon6730566967305887-
GWHAAZE00000006exon6730539167305558-
GWHAAZE00000006exon6730483467304922-
GWHAAZE00000006exon6730435767304387-
GWHAAZE00000006CDS6731423367314333-
GWHAAZE00000006CDS6731400267314101-
GWHAAZE00000006CDS6731098367311168-
GWHAAZE00000006CDS6731059167310638-
GWHAAZE00000006CDS6731030467310507-
GWHAAZE00000006CDS6731014467310221-
GWHAAZE00000006CDS6730997767310066-
GWHAAZE00000006CDS6730980867309888-
GWHAAZE00000006CDS6730961967309681-
GWHAAZE00000006CDS6730763367307668-
GWHAAZE00000006CDS6730746367307549-
GWHAAZE00000006CDS6730723767307386-
GWHAAZE00000006CDS6730709767307152-
GWHAAZE00000006CDS6730689767307017-
GWHAAZE00000006CDS6730664967306810-
GWHAAZE00000006CDS6730599267306135-
GWHAAZE00000006CDS6730566967305887-
GWHAAZE00000006CDS6730539167305558-
GWHAAZE00000006CDS6730483467304922-
GWHAAZE00000006CDS6730435767304387-
Transcript Sequence

Network for GWHGAAZE022128

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00888.23Cullin356347.70E-179
PF10557.10Cullin_Nedd86617231.70E-25
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyCullin

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0031625molecular_functionubiquitin protein ligase binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf92.542
SRR3591706second leaf44.698
SRR3591707mature leaf48.053
SRR3591708Shoot apex56.686
SRR3591709Stem88.869
SRR3591710White floral bud99.663
SRR3591711White flower109.008
SRR3591712Green floral bud85.756
SRR3591713Yellow flower104.118
SRP173429 SRR8316895Juvenile bud stage 42.534
SRR8316896Juvenile bud stage 65.835
SRR8316897Juvenile bud stage 31.112
SRR8316894Third green stage 29.979
SRR8316900Third green stage 86.784
SRR8316901Third green stage 78.553
SRR8316898Complete white stage 33.563
SRR8316899Complete white stage 101.779
SRR8316903Complete white stage 59.673
SRR8316902Silver flowering stage45.312
SRR8316904Silver flowering stage65.829
SRR8316905Silver flowering stage28.088
SRR8316906Gold flowering stage 101.234
SRR8316907Gold flowering stage 95.053
SRR8316908Gold flowering stage 97.525
SRP132670SRR6706286Control67.643
SRR6706287Light intensity 50%72.757
SRR6706288Light intensity 20%75.932
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.465
CNS0095593Slightly white alabastrum(diploid) 255.712
CNS0095594Slightly white alabastrum(diploid) 354.344
CNS0095595Whole white alabastrum(diploid) 274.583
CNS0095596Whole white alabastrum(diploid) 375.568
CNS0095597Whole white alabastrum(diploid) 481.424
CNS0095598Silvery flower (diploied) 153.457
CNS0095599Silvery flower (diploied) 248.989
CNS0095600Silvery flower (diploied) 389.811
CNS0095601Golden flower (diploid) 147.939
CNS0095602Golden flower (diploid) 290.302
CNS0095603Golden flower (diploid) 384.445
CNS0095604Slightly white alabastrum(tetraploid) 175.596
CNS0095605Slightly white alabastrum(tetraploid) 272.586
CNS0095606Slightly white alabastrum(tetraploid) 387.337
CNS0095607Whole white alabastrum(tetraploid) 184.930
CNS0095608Whole white alabastrum(tetraploid) 281.824
CNS0095609Whole white alabastrum(tetraploid) 383.717
CNS0095610Silvery flower (tetraploid) 193.432
CNS0095611Silvery flower (tetraploid) 295.660
CNS0095612Silvery flower (tetraploid) 3106.142
CNS0095613Golden flower (tetraploid) 162.600
CNS0095614Golden flower (tetraploid) 280.940
CNS0095615Golden flower (tetraploid) 3107.706
CRA001975CRR073297Stem 154.853
CRR073298Stem 249.734
CRR073299Stem 340.986
CRR073300Leaf 173.442
CRR073301Leaf 255.886
CRR073302Leaf 347.895
CRR073303Juvenile bud 170.246
CRR073304Juvenile bud 249.905
CRR073305Juvenile bud 371.285
CRR073306Third green 141.104
CRR073307Third green 234.841
CRR073308Third green 341.329
CRR073309Second white 154.991
CRR073310Second white 271.452
CRR073311Second white 368.725
CRR073312Silver flowering 167.801
CRR073313Silver flowering 265.140
CRR073314Silver flowering 356.090
CRR073315Gold flowering 132.360
CRR073316Gold flowering 242.948
CRR073317Gold flowering 327.655
CRR073318Tawny withering 150.580
CRR073319Tawny withering 251.336
CRR073320Tawny withering 358.538