Gene detail

Detail information of GWHGAAZE022123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071459.1	0	PREDICTED: protein ALWAYS EARLY 3 [Sesamum indicum]
Swissprot	tr\|Q6A332\|ALY3_ARATH	0	Protein ALWAYS EARLY 3
trEMBL	tr\|K4AX04\|K4AX04_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g067560.2.1}
TAIR10	AT3G05380.5	3E-159	DIRP ;Myb-like DNA-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67224776	67248275	+
GWHAAZE00000006	mRNA	67224776	67248275	+
GWHAAZE00000006	exon	67224776	67224880	+
GWHAAZE00000006	exon	67225502	67225533	+
GWHAAZE00000006	exon	67227763	67227889	+
GWHAAZE00000006	exon	67228049	67228111	+
GWHAAZE00000006	exon	67229740	67229817	+
GWHAAZE00000006	exon	67231578	67231764	+
GWHAAZE00000006	exon	67232036	67232301	+
GWHAAZE00000006	exon	67232389	67232740	+
GWHAAZE00000006	exon	67232854	67232931	+
GWHAAZE00000006	exon	67236729	67237009	+
GWHAAZE00000006	exon	67237128	67237184	+
GWHAAZE00000006	exon	67238952	67239260	+
GWHAAZE00000006	exon	67239337	67239515	+
GWHAAZE00000006	exon	67239637	67239919	+
GWHAAZE00000006	exon	67245407	67245649	+
GWHAAZE00000006	exon	67246285	67246458	+
GWHAAZE00000006	exon	67247588	67247731	+
GWHAAZE00000006	exon	67247834	67248052	+
GWHAAZE00000006	exon	67248144	67248275	+
GWHAAZE00000006	CDS	67224776	67224880	+
GWHAAZE00000006	CDS	67225502	67225533	+
GWHAAZE00000006	CDS	67227763	67227889	+
GWHAAZE00000006	CDS	67228049	67228111	+
GWHAAZE00000006	CDS	67229740	67229817	+
GWHAAZE00000006	CDS	67231578	67231764	+
GWHAAZE00000006	CDS	67232036	67232301	+
GWHAAZE00000006	CDS	67232389	67232740	+
GWHAAZE00000006	CDS	67232854	67232931	+
GWHAAZE00000006	CDS	67236729	67237009	+
GWHAAZE00000006	CDS	67237128	67237184	+
GWHAAZE00000006	CDS	67238952	67239260	+
GWHAAZE00000006	CDS	67239337	67239515	+
GWHAAZE00000006	CDS	67239637	67239919	+
GWHAAZE00000006	CDS	67245407	67245649	+
GWHAAZE00000006	CDS	67246285	67246458	+
GWHAAZE00000006	CDS	67247588	67247731	+
GWHAAZE00000006	CDS	67247834	67248052	+
GWHAAZE00000006	CDS	67248144	67248275	+

Transcript Sequence
>GWHTAAZE022151 ATGGCTCCAACACGAAAGTCTAGAAGTGTGAATAAGCGTTATTCTTATATTAACGAGGTCTCTCGTAGTAGAGATGGAGACAATGCTAACAAAAAAACCAATCGGGTGAGACAGTGTTGTGTTTTAGTAGAATCAAGAATGACTAGACCATTGTGTTATTTGCAGAAGAAGAAATTGTCTGACATGTTGGGGATTGAATGGAGCAAGGAAGAGTTGGAGCGTTTTTATGCAGCGTATCGGAAGCATGGAAAAGATTGGAAAAAGGTGGCTGCTGTAGTGCGAAATAGATCTTCAGAAATGGCGGAGGCCCTTTACACAATGAATAGGGCTTACTTATCTCTTCCAGAGGGGACAGCTTCTGTGGCTGGGCTTATTGCAATGATGACAGATTATTACAGCAACTTGGCACGAACTGATAGTGAGCAAGAAAGCAACGATGGTGCAGGAACGTCCCGAAAACCTCAAAAGCGTGCTCCGGTTAAAGTTCAACCGAGTGCATGTAAAGGATCTGAGGGGCTTTCTCTCTTTCATACCCAGGCAGTTGGATCAAATTATGGGGGCTTGACGTTGTTGAAGAAGAAGCGTTCTGGTGGAACCCGACCTCGTGCAGTTGGGAAAAGGACGCCGCGTTTCCCTGTTTCGTATTCGTACGAGAATGTTAACGGGGAAAAGTATTGTTCTCCAAGCAGGCTTGGCCTGAAACCAAAAATGGATGCTAATGATGATGAAGTGGCTCATGAAATAGCATTAGCACTGGCAGAGGCTTCACAAAGAGTTGGTTCACCCCAGGTTTCCCAAACACCAAACAGAAGAACAATGTGTGATACGTTGTCACCTGTTACCAATGCTAAAAGAATGCATGCTGGACTAGAAATGCTTATCGGTAGTGACATGGATGAAGACGGTTTAGAAGGAAGCATGGAAGCTGATAATGGAGATTCTTCTAGAGATAAGGGTTATTTGATGGAAACAAGGGGTGTTGAACCTTCGGTTCAGAAAGGAAGAAAACATTATGGAAAGAAGGTAGAAGTTGATGACTCTGGAAGCAATCATTTGGATGATATTAGGGAAGCCTGTAGTGGGACAGAAGAAGGGCAAAATTTGGGTGCCGGAAGAGGAAAATTTGACATTGAGGTTAGTGATGCAAAAATTTCAAGGTCCTCTTCTGGGGGACCAAGGAAGAGAAGCAAAAAAGCTCTTTTCAGAAGAGATGAAGTCTCTGCCTTTGATGCCCTCCAAACTTTGGCTAATTTATCTTTAATGATGCCAGATACGACAAATGAAAATGAGCAATCGGTGCAGGTCAAAGAAGAAAATGATGATCATGTTGGTGAATCTGGGTTATTGGAAGCTATGCCTGCAAACCGTCAAAAAGAGAAACGTAAAACATCAGGTGTTAAAGTGAAAGGGACTCAGTCAATATTGAAATTTGAAGTTTCTACTGTTAAAGCATCAAAACCAGGAAAACTTCCAGTTCTCGATGGTAGTGCTATTGCCGAGGGTAAACAGGACTTCCACCAGTCCATTACTAAGCTGTCCAGAAAAAAACATAAAACCTTAGCATCTAAAATCCCAAAAGTTGAAGCTCATGGCGATACTCATCTAAGTGAATATCAAGAGGCTGAGGCTCCTGGGAAAGAATCAGGGGGAAAGGGTAGAAGATCTTCTCAAAGTGCTTCACCGAAATTGTTTAAATATCCAGAACGTTCTTCATCAAGTACAGATCCCAGAAGGGAAGGAAGTGAAACAGCTCTGTCATCTATACAGGTTCCTGTGAAAAACCAGGTTAATTTAGCTACCAAAGTTAGGAACAAGCGTAAGATTGACCTAGAGAAACCCCAGATAATCAAAGATTTGAAGTTTTCAGATGAGACTATAAGGAACCATGCCAGTGCACCATTTCCTTCCTTGCACGATAGGGCACTGGATCTTAAGGGAAAACTTTCTAACTGCCTATTAAATCGCCGACTAAGGAGACGGTGTACATTTGAGTGGTTCTATAGTGCAATTGACTACCCTTGGTTTGCGAAAAGAGAGTTTGTGGAGTACTTATATCATGTTGGTTTGGGCCATGTTCCGAGATTAACTCGAGTTGAATGGGGTGTCATTAGAAGCTCTCTTGGCAAACCACGGAGATTTTCTGAACAATTCTTGAAGGAAGAAAAGGAGAAGCTTAATCAATACCGCAATTCTGTGAGAACACATTACACTGAACTTCGTTCCGGAACCAGGGAAGGACTACCAACAGATCTTGCTAGGCCTTTATCCGTTGGACAGCGTGTTATTGCTATCCATCCAATAACAAGAGAGATTCATGATGGAAGTGTATTAACGGTAGATCATGACAGGTGCAGGGTACAATTTGATCGACCTGAGCTTGGTGTTGAATTTGTCATGGATATTGATTGTATGCCCTTAAATCCTTTGGAGAACATGCCTACATCTCTGGCAAGACCCACTTTTGCTGTTGATAAGTTCTTTGAGAACTTCAATGAGCTAAAAATTAATGGGCAGGCAAAAGATCAGAGACTAGATGGGTACATGAAGCTTTTACCTGGTGAGAACCTGGAGAAAATTGATAGTCCCTCACATGCATCTCCATCAGCATATATCATGTGTAATCTATTAAAGCAGGCGAAGTTTCAGGGTCAGGTAGCTCCTACCATTGCTGATTCACAAACAAAAATGGGAACCAAGGAAACAGCTGCCAATCTACAGACAGCATATTCTATGCCCTGTACTCTCGCGCAGCTTCAGGCAAATGAAGCTGATGTTCAAGCTATTGCTGAACTGACTCGGGCTCTTGACAAAAAGGAAGCAGTAGTTTCAGAGTTGAGGCGAATGAACGATGACGTGTCCGAAAACAAAAAGGACGGTACCTGTGCTCTCAAGGATTCAGAGCCTTTTAAAAAGCAATACGCTGCTGTACTAATACAGTTAAATGAAGCCAATGAGCAGTTGTCTTCTGCTTTGTATTGCTTGAGGCAACGCAACACTTACCAAGGAAACTTCTCGCATACATGGCCAAGGCCAATGGCCAATTTAGTTGACTCTGGTGGTGGCCTATTGACCTCTTCCGATCGTTCTGCCAATCATGTTGAGACGTCAGCACATGCCAATGAAATTGTTGAAAGCTCAAGAACAAAGGCCCGTACAATGGTAGATGCAGCTATGCAGGCAATGAAATCACTGAAGGGGGGAGGAAATAGCTTTGAGAAGATTGAGGAGGCGATCGATTATGTGAATGATCGGCTTCCTTTAGATGATGTGCACTGCTCCGATGAGACCTTCAACCAACTCAGATCCTGA

Network for GWHGAAZE022123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	66	99	1.50E-07
PF06584.14	DIRP	666	766	1.70E-31

Protein Sequence

>GWHPAAZE022138
MAPTRKSRSVNKRYSYINEVSRSRDGDNANKKTNRVRQCCVLVESRMTRPLCYLQKKKLSDMLGIEWSKEELERFYAAYRKHGKDWKKVAAVVRNRSSEMAEALYTMNRAYLSLPEGTASVAGLIAMMTDYYSNLARTDSEQESNDGAGTSRKPQKRAPVKVQPSACKGSEGLSLFHTQAVGSNYGGLTLLKKKRSGGTRPRAVGKRTPRFPVSYSYENVNGEKYCSPSRLGLKPKMDANDDEVAHEIALALAEASQRVGSPQVSQTPNRRTMCDTLSPVTNAKRMHAGLEMLIGSDMDEDGLEGSMEADNGDSSRDKGYLMETRGVEPSVQKGRKHYGKKVEVDDSGSNHLDDIREACSGTEEGQNLGAGRGKFDIEVSDAKISRSSSGGPRKRSKKALFRRDEVSAFDALQTLANLSLMMPDTTNENEQSVQVKEENDDHVGESGLLEAMPANRQKEKRKTSGVKVKGTQSILKFEVSTVKASKPGKLPVLDGSAIAEGKQDFHQSITKLSRKKHKTLASKIPKVEAHGDTHLSEYQEAEAPGKESGGKGRRSSQSASPKLFKYPERSSSSTDPRREGSETALSSIQVPVKNQVNLATKVRNKRKIDLEKPQIIKDLKFSDETIRNHASAPFPSLHDRALDLKGKLSNCLLNRRLRRRCTFEWFYSAIDYPWFAKREFVEYLYHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLNQYRNSVRTHYTELRSGTREGLPTDLARPLSVGQRVIAIHPITREIHDGSVLTVDHDRCRVQFDRPELGVEFVMDIDCMPLNPLENMPTSLARPTFAVDKFFENFNELKINGQAKDQRLDGYMKLLPGENLEKIDSPSHASPSAYIMCNLLKQAKFQGQVAPTIADSQTKMGTKETAANLQTAYSMPCTLAQLQANEADVQAIAELTRALDKKEAVVSELRRMNDDVSENKKDGTCALKDSEPFKKQYAAVLIQLNEANEQLSSALYCLRQRNTYQGNFSHTWPRPMANLVDSGGGLLTSSDRSANHVETSAHANEIVESSRTKARTMVDAAMQAMKSLKGGGNSFEKIEEAIDYVNDRLPLDDVHCSDETFNQLRS

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.351
	SRR3591706	second leaf	9.795
	SRR3591707	mature leaf	11.331
	SRR3591708	Shoot apex	16.053
	SRR3591709	Stem	14.269
	SRR3591710	White floral bud	18.151
	SRR3591711	White flower	21.535
	SRR3591712	Green floral bud	12.708
	SRR3591713	Yellow flower	16.413
SRP173429	SRR8316895	Juvenile bud stage	8.620
	SRR8316896	Juvenile bud stage	11.530
	SRR8316897	Juvenile bud stage	5.775
	SRR8316894	Third green stage	4.863
	SRR8316900	Third green stage	11.376
	SRR8316901	Third green stage	9.927
	SRR8316898	Complete white stage	6.453
	SRR8316899	Complete white stage	14.074
	SRR8316903	Complete white stage	10.273
	SRR8316902	Silver flowering stage	6.117
	SRR8316904	Silver flowering stage	9.577
	SRR8316905	Silver flowering stage	4.359
	SRR8316906	Gold flowering stage	12.584
	SRR8316907	Gold flowering stage	12.098
	SRR8316908	Gold flowering stage	13.502
SRP132670	SRR6706286	Control	8.962
	SRR6706287	Light intensity 50%	9.128
	SRR6706288	Light intensity 20%	9.332
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.864
	CNS0095593	Slightly white alabastrum(diploid) 2	4.868
	CNS0095594	Slightly white alabastrum(diploid) 3	4.620
	CNS0095595	Whole white alabastrum(diploid) 2	4.897
	CNS0095596	Whole white alabastrum(diploid) 3	3.704
	CNS0095597	Whole white alabastrum(diploid) 4	3.690
	CNS0095598	Silvery flower (diploied) 1	8.137
	CNS0095599	Silvery flower (diploied) 2	7.886
	CNS0095600	Silvery flower (diploied) 3	14.399
	CNS0095601	Golden flower (diploid) 1	7.033
	CNS0095602	Golden flower (diploid) 2	12.384
	CNS0095603	Golden flower (diploid) 3	13.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.310
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.555
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.805
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.845
	CNS0095610	Silvery flower (tetraploid) 1	15.220
	CNS0095611	Silvery flower (tetraploid) 2	13.302
	CNS0095612	Silvery flower (tetraploid) 3	18.495
	CNS0095613	Golden flower (tetraploid) 1	6.459
	CNS0095614	Golden flower (tetraploid) 2	11.242
	CNS0095615	Golden flower (tetraploid) 3	10.728
CRA001975	CRR073297	Stem 1	13.768
	CRR073298	Stem 2	13.992
	CRR073299	Stem 3	13.226
	CRR073300	Leaf 1	12.644
	CRR073301	Leaf 2	12.414
	CRR073302	Leaf 3	9.198
	CRR073303	Juvenile bud 1	9.371
	CRR073304	Juvenile bud 2	7.718
	CRR073305	Juvenile bud 3	15.181
	CRR073306	Third green 1	9.075
	CRR073307	Third green 2	7.553
	CRR073308	Third green 3	11.151
	CRR073309	Second white 1	9.751
	CRR073310	Second white 2	13.651
	CRR073311	Second white 3	16.119
	CRR073312	Silver flowering 1	13.931
	CRR073313	Silver flowering 2	13.166
	CRR073314	Silver flowering 3	12.626
	CRR073315	Gold flowering 1	7.544
	CRR073316	Gold flowering 2	11.475
	CRR073317	Gold flowering 3	6.251
	CRR073318	Tawny withering 1	10.305
	CRR073319	Tawny withering 2	9.823
	CRR073320	Tawny withering 3	12.753