Gene detail

Detail information of GWHGAAZE022121

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006342757.1	0	PREDICTED: zinc finger CCCH domain-containing protein 58-like [Solanum tuberosum]
Swissprot	tr\|Q6NPN3\|C3H58_ARATH	7E-133	Zinc finger CCCH domain-containing protein 58
trEMBL	tr\|M1C2H3\|M1C2H3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058323}
TAIR10	AT2G47850.3	6E-94	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67172903	67178810	-
GWHAAZE00000006	mRNA	67172903	67178810	-
GWHAAZE00000006	exon	67172903	67173292	-
GWHAAZE00000006	exon	67173858	67173934	-
GWHAAZE00000006	exon	67175038	67175118	-
GWHAAZE00000006	exon	67175212	67175272	-
GWHAAZE00000006	exon	67176449	67176766	-
GWHAAZE00000006	exon	67176855	67177163	-
GWHAAZE00000006	exon	67177271	67177390	-
GWHAAZE00000006	exon	67178093	67178158	-
GWHAAZE00000006	exon	67178506	67178651	-
GWHAAZE00000006	exon	67178744	67178810	-
GWHAAZE00000006	CDS	67178744	67178810	-
GWHAAZE00000006	CDS	67178506	67178651	-
GWHAAZE00000006	CDS	67178093	67178158	-
GWHAAZE00000006	CDS	67177271	67177390	-
GWHAAZE00000006	CDS	67176855	67177163	-
GWHAAZE00000006	CDS	67176449	67176766	-
GWHAAZE00000006	CDS	67175212	67175272	-
GWHAAZE00000006	CDS	67175038	67175118	-
GWHAAZE00000006	CDS	67173858	67173934	-
GWHAAZE00000006	CDS	67172903	67173292	-

Transcript Sequence
>GWHTAAZE022149 ATGGAAGGTCCACAGGCCGATCCGGTGGCGGAATGGAGCTCGCCTGGAGGGGAAACGGGGCTAGAAGAGCATATGTGGCATTTGGGGCTCGGAACCGCCGCAGAACCGTACCCCGAACGCCCCGATGAGGCCGATTGTATCTACTATTTGAAGACAGGGTTTTGTGGATATGGTGTACGGTGCCGTTTCAATCATCCACGTGACCGTACTTCGGCTATGGGAGCTTTGAGGGCCGGTGGAGGAGACTACCCGGAGCGAGTTGGCCAACCTGTGTGCCAGTACTATATGAGGACGGGAATGTGTAAATTCGGTGCTTCCTGCAAGTATCACCATCCAAGGCAGGGAGGTGGATCTACTCTCCCAGTGCCCCTTAATATTTCTGGATACCCATTGCGACTGGGTGAAAAGGAGTGTTCGTACTATTTGAAAACGGGGCAGTGCAAGTTTGGTGTAACCTGTAAATTCCATCATCCACAGCCTGAAGGCATACAAATGGCAGCTCCGGCACCTGGACCTTTGCATGCGCCTACAATTTATCCTGCGGTGCAGTCTCCTCCTGTTCCATCATCTCAACAATACGGGGTAGTCCCAAGCAACTGGCCGGTTGCAAGGCCTACTATGATTCCAGGTTCATATATACCAGGTACATATAGCCCAATGCTGCTTCCCCCCGGTATGCTTCCCTTTCCGGGTTGGAGTCCTTACCAGGCACCTTTAAGTCCAGTAGCATCTCCTAATACTCAACCCACCATTGGAGCAAGCCCAATTTACGGGATAACACAATTATCTCCATCAGCGCCTGCTTATACTGGACCTTATCTATCTGCACCTTCTTCTGCTGGTCCTTCAGGTAGTAGTCAGAGGGAACATGCATTTCCAGAAAGACCTGGCCAACCTGAATGTCATTATTACATGAAAACAGGAGACTGTAAATTTGGGTCTTCATGTAGATATCATCATCCACCAGAATGGAGTGCAGAGAAAACAATTTTTGTCCTTAGCCCCATGGGTCTTCCTCTACGTCCGTTGGTTTGGTTCGATGGGCCTTTTGCCGCCCTCCCAAGTGTGGGAATGGTTAGCTATGCCGTCAACTTCCTCACCTCTACAATACATGTTAACTACCTTAGTGACTTAATTGCTGGGGAATCAACAGAACTCTTAGGATCAGGTATACCGGAGATTCATGGTCTTGCACGCTTGCTTAGCATGAGAGTTGGTGTTGCATGTGCAAACAGGTTGGTTGAGGGTGCGCCACTCTGTTCTCACTATGCTCAAAACGGAGTTTGCAAATTCGGGCCCTCTTGCAAATTTGATCACCCAATGGGAACACTGAGTTACAGTCCGTCTGCATCTTCTCTTTCCGATATGCCAGTTGCCCCTTACCCCGTGGGATCTTCAGCGGGCACTTTAGCCCCGTCATCCTCCTCATCAGACTTAAGGCACGAACTTACAGCATCCAATAAAGATGCCTTTTCAACCAGAATGTCATCTTCAATGAGCACCTCAAGTGGTTCAATTTTCTCAAGGGGCGGGCCCGTTCCTCATTCTAGTATGCAGCAGCCCGGGCAGAGTTCTATCCCTTCAACTGGCAGTGGCAGCAGCTCCAGCCATGGAGGTGAGTTCCCATCAAACTGA

Network for GWHGAAZE022121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	42	67	2.70E-09
PF00642.25	zf-CCCH	89	113	1.30E-08
PF00642.25	zf-CCCH	135	159	1.10E-09
PF00642.25	zf-CCCH	297	322	2.90E-09
PF00642.25	zf-CCCH	418	441	6.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.022
	SRR3591706	second leaf	22.474
	SRR3591707	mature leaf	12.670
	SRR3591708	Shoot apex	22.723
	SRR3591709	Stem	16.323
	SRR3591710	White floral bud	23.528
	SRR3591711	White flower	23.956
	SRR3591712	Green floral bud	43.310
	SRR3591713	Yellow flower	10.580
SRP173429	SRR8316895	Juvenile bud stage	20.841
	SRR8316896	Juvenile bud stage	24.300
	SRR8316897	Juvenile bud stage	12.510
	SRR8316894	Third green stage	12.380
	SRR8316900	Third green stage	37.422
	SRR8316901	Third green stage	35.608
	SRR8316898	Complete white stage	7.550
	SRR8316899	Complete white stage	30.129
	SRR8316903	Complete white stage	14.570
	SRR8316902	Silver flowering stage	10.433
	SRR8316904	Silver flowering stage	12.713
	SRR8316905	Silver flowering stage	6.129
	SRR8316906	Gold flowering stage	18.901
	SRR8316907	Gold flowering stage	18.535
	SRR8316908	Gold flowering stage	15.499
SRP132670	SRR6706286	Control	37.582
	SRR6706287	Light intensity 50%	38.086
	SRR6706288	Light intensity 20%	40.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.218
	CNS0095593	Slightly white alabastrum(diploid) 2	16.804
	CNS0095594	Slightly white alabastrum(diploid) 3	13.003
	CNS0095595	Whole white alabastrum(diploid) 2	20.323
	CNS0095596	Whole white alabastrum(diploid) 3	18.087
	CNS0095597	Whole white alabastrum(diploid) 4	17.374
	CNS0095598	Silvery flower (diploied) 1	16.682
	CNS0095599	Silvery flower (diploied) 2	12.751
	CNS0095600	Silvery flower (diploied) 3	18.993
	CNS0095601	Golden flower (diploid) 1	11.019
	CNS0095602	Golden flower (diploid) 2	14.450
	CNS0095603	Golden flower (diploid) 3	13.738
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.187
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.288
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.801
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.643
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.933
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.026
	CNS0095610	Silvery flower (tetraploid) 1	16.019
	CNS0095611	Silvery flower (tetraploid) 2	17.676
	CNS0095612	Silvery flower (tetraploid) 3	16.526
	CNS0095613	Golden flower (tetraploid) 1	5.376
	CNS0095614	Golden flower (tetraploid) 2	10.446
	CNS0095615	Golden flower (tetraploid) 3	6.049
CRA001975	CRR073297	Stem 1	33.236
	CRR073298	Stem 2	34.994
	CRR073299	Stem 3	33.116
	CRR073300	Leaf 1	41.714
	CRR073301	Leaf 2	41.937
	CRR073302	Leaf 3	34.773
	CRR073303	Juvenile bud 1	32.601
	CRR073304	Juvenile bud 2	31.474
	CRR073305	Juvenile bud 3	35.924
	CRR073306	Third green 1	22.205
	CRR073307	Third green 2	13.510
	CRR073308	Third green 3	16.797
	CRR073309	Second white 1	9.834
	CRR073310	Second white 2	8.515
	CRR073311	Second white 3	6.638
	CRR073312	Silver flowering 1	3.859
	CRR073313	Silver flowering 2	4.281
	CRR073314	Silver flowering 3	1.791
	CRR073315	Gold flowering 1	7.731
	CRR073316	Gold flowering 2	12.390
	CRR073317	Gold flowering 3	11.170
	CRR073318	Tawny withering 1	16.348
	CRR073319	Tawny withering 2	11.525
	CRR073320	Tawny withering 3	10.581