Detail information of GWHGAAZE022097


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFH96953.14.30674E-87Cu/Zn superoxide dismutase [Eleutherococcus senticosus]
COGYP_003290884.16E-30Superoxide dismutase
Swissprottr|Q07796|SODC_IPOBA4E-84Superoxide dismutase [Cu-Zn]
trEMBLtr|I0E1Y5|I0E1Y5_9APIA2E-87Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}
TAIR10AT1G08830.26E-59copper/zinc superoxide dismutase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6681592066817863-
GWHAAZE00000006mRNA6681592066817863-
GWHAAZE00000006exon6681778866817863-
GWHAAZE00000006exon6681759266817693-
GWHAAZE00000006exon6681731766817463-
GWHAAZE00000006exon6681667666816707-
GWHAAZE00000006exon6681651966816594-
GWHAAZE00000006exon6681592066815972-
GWHAAZE00000006CDS6681778866817863-
GWHAAZE00000006CDS6681759266817693-
GWHAAZE00000006CDS6681731766817463-
GWHAAZE00000006CDS6681667666816707-
GWHAAZE00000006CDS6681651966816594-
GWHAAZE00000006CDS6681592066815972-
Transcript Sequence

Network for GWHGAAZE022097

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00080.21Sod_Cu121622.70E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04565SOD1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0006801biological_processsuperoxide metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0046872molecular_functionmetal ion binding
GO:0004784molecular_functionsuperoxide dismutase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf943.276
SRR3591706second leaf847.286
SRR3591707mature leaf538.167
SRR3591708Shoot apex857.567
SRR3591709Stem701.470
SRR3591710White floral bud468.472
SRR3591711White flower626.372
SRR3591712Green floral bud543.890
SRR3591713Yellow flower627.140
SRP173429 SRR8316895Juvenile bud stage 467.648
SRR8316896Juvenile bud stage 455.122
SRR8316897Juvenile bud stage 311.786
SRR8316894Third green stage 235.148
SRR8316900Third green stage 820.943
SRR8316901Third green stage 735.476
SRR8316898Complete white stage 348.587
SRR8316899Complete white stage 1213.947
SRR8316903Complete white stage 438.749
SRR8316902Silver flowering stage301.934
SRR8316904Silver flowering stage298.929
SRR8316905Silver flowering stage158.579
SRR8316906Gold flowering stage 638.375
SRR8316907Gold flowering stage 661.616
SRR8316908Gold flowering stage 766.412
SRP132670SRR6706286Control464.774
SRR6706287Light intensity 50%522.087
SRR6706288Light intensity 20%656.755
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1588.791
CNS0095593Slightly white alabastrum(diploid) 2611.308
CNS0095594Slightly white alabastrum(diploid) 3516.732
CNS0095595Whole white alabastrum(diploid) 2595.958
CNS0095596Whole white alabastrum(diploid) 3463.997
CNS0095597Whole white alabastrum(diploid) 4498.310
CNS0095598Silvery flower (diploied) 1900.526
CNS0095599Silvery flower (diploied) 2787.876
CNS0095600Silvery flower (diploied) 3742.708
CNS0095601Golden flower (diploid) 1959.579
CNS0095602Golden flower (diploid) 2889.358
CNS0095603Golden flower (diploid) 3850.181
CNS0095604Slightly white alabastrum(tetraploid) 1544.748
CNS0095605Slightly white alabastrum(tetraploid) 2473.944
CNS0095606Slightly white alabastrum(tetraploid) 3912.001
CNS0095607Whole white alabastrum(tetraploid) 1417.589
CNS0095608Whole white alabastrum(tetraploid) 2347.574
CNS0095609Whole white alabastrum(tetraploid) 3581.441
CNS0095610Silvery flower (tetraploid) 1882.704
CNS0095611Silvery flower (tetraploid) 2900.583
CNS0095612Silvery flower (tetraploid) 3534.649
CNS0095613Golden flower (tetraploid) 1502.518
CNS0095614Golden flower (tetraploid) 2854.805
CNS0095615Golden flower (tetraploid) 3293.000
CRA001975CRR073297Stem 1646.581
CRR073298Stem 2627.789
CRR073299Stem 3819.854
CRR073300Leaf 1742.826
CRR073301Leaf 2762.581
CRR073302Leaf 31013.239
CRR073303Juvenile bud 11212.582
CRR073304Juvenile bud 21184.713
CRR073305Juvenile bud 3927.892
CRR073306Third green 1520.236
CRR073307Third green 2612.685
CRR073308Third green 3380.041
CRR073309Second white 1733.954
CRR073310Second white 2395.607
CRR073311Second white 3246.612
CRR073312Silver flowering 1346.170
CRR073313Silver flowering 2541.707
CRR073314Silver flowering 3281.529
CRR073315Gold flowering 1579.379
CRR073316Gold flowering 2563.256
CRR073317Gold flowering 3724.232
CRR073318Tawny withering 11521.631
CRR073319Tawny withering 21332.091
CRR073320Tawny withering 31212.986