Gene detail

Detail information of GWHGAAZE022080

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98948.1	0	unnamed protein product [Coffea canephora]
COG	YP_005269820.1	4E-22	serine/threonine-protein kinase PrkC
Swissprot	tr\|Q8RXC8\|RBK2_ARATH	8E-137	Receptor-like cytosolic serine/threonine-protein kinase RBK2
trEMBL	tr\|A0A068TUC1\|A0A068TUC1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98948.1}
TAIR10	AT5G18910.1	2E-130	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66584630	66587380	+
GWHAAZE00000006	mRNA	66584630	66587380	+
GWHAAZE00000006	exon	66584630	66584714	+
GWHAAZE00000006	exon	66585030	66585413	+
GWHAAZE00000006	exon	66586011	66586262	+
GWHAAZE00000006	exon	66586365	66586519	+
GWHAAZE00000006	exon	66586658	66586737	+
GWHAAZE00000006	exon	66586831	66586966	+
GWHAAZE00000006	exon	66587195	66587380	+
GWHAAZE00000006	CDS	66584630	66584714	+
GWHAAZE00000006	CDS	66585030	66585413	+
GWHAAZE00000006	CDS	66586011	66586262	+
GWHAAZE00000006	CDS	66586365	66586519	+
GWHAAZE00000006	CDS	66586658	66586737	+
GWHAAZE00000006	CDS	66586831	66586966	+
GWHAAZE00000006	CDS	66587195	66587380	+

Transcript Sequence
>GWHTAAZE022108 ATGGCTGAAGGACATATAGGAGAGCTTGTTGAAATTGGAAACACAATCCTATTTTCTGCTCCATCCGACTCTCTTTCTGCTGAAGATTTGGAAATGGAGGAAGAGAAAGTTCATGGGTTAGCAGTTCTCGCGGAGGACTCAGAATACGAAACAGCGTCTCCCAAGGGTAGCTCTTCAGATTCTGAATCTCCCAAGTCCGAAATTTCAGATTTAGAAGCTCACAACAATTTAAAATCCTGGCGCGGGTTTTTACGGAAGTTGAGGAAGGGACCTGCAAAAAGTTTGCACACTTTTCATCCTAGCATACCTTCATTCTCCCGGAGGCTTCCAAGAAAAAAAAGTAGAAATGAAGCACAAAGCATGCCAGCAATGCCTCCCAATCTAGATGCCGAATTGTACTACTTTGAGGCTTCTTGGGTTAATTTTTCCCTCTCTGATCTCAAACACGCTACGAACAATTTTAGCAAAGACAATTTGATTGGAGAGGGAGGTTACTCAGAAGTTTACAAAGGGAATTTGCCGGATGGGCAACTCGTAGCGATCAAACGGTTGATCAGGGGATCACCAGAAGAGATGACATCAGATTTTTTATCCGAGCTTGGGATATTAGTCCATGTAAACCATCCCAATATCGCTAAAGTTATTGGCTATGGGGTTGAAGGAGGGATGCACCTTGTTCTTACTTTATCTCCCCATGGGAGCTTAGCGTCACTACCTAATGGTGACAAGGAGAAACTAGCATGGGGAATCAGATACAATATTGCTTTAGGCACTGCCTCAGGCCTTTCATATCTTCATGAAGGTTGTCAGCGGAGAATTATCCATAGAGATATCAAGGCTGCTAACATTTTGCTCACAGAAGATTTTGAGCCTCAGATATCTGATTTCGGACTTGCAAAGTGGCTGCCAGATCAATGGACTCATCTCACTGTATCGCAGTTTGAAGGCACATTTGGCTACCTTTCTCCTGAGATATTTATGTATGGCGTAGTCGATGAGAAGACTGATGTCTATGCTTATGGGGTACTATTACTGGAGCTCATTACTGGACGTCCAGCATTAGATGAGTCGCAAAAAAGTCTTGTGATGTGGGCGAAACCGTTAATTGCTGCACTTAATTTAGAAGAGCTTGTTGATCCACTCCTTGACGGTGAGTATGATTCAGAACAAGTAACTCGTATACTTTTGATTGCCTCTCAATGCTTGCATCAAGCTTCAACCGAACGGCCATATATGAGTCAGGTTAGTGTTGATTGTGGAGACACCAAGTATAATTAA

Network for GWHGAAZE022080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	155	415	1.40E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.967
	SRR3591706	second leaf	0.067
	SRR3591707	mature leaf	0.136
	SRR3591708	Shoot apex	0.142
	SRR3591709	Stem	0.885
	SRR3591710	White floral bud	38.984
	SRR3591711	White flower	2.293
	SRR3591712	Green floral bud	41.146
	SRR3591713	Yellow flower	0.858
SRP173429	SRR8316895	Juvenile bud stage	2.525
	SRR8316896	Juvenile bud stage	3.234
	SRR8316897	Juvenile bud stage	1.780
	SRR8316894	Third green stage	1.148
	SRR8316900	Third green stage	21.869
	SRR8316901	Third green stage	17.227
	SRR8316898	Complete white stage	0.291
	SRR8316899	Complete white stage	1.347
	SRR8316903	Complete white stage	0.339
	SRR8316902	Silver flowering stage	0.104
	SRR8316904	Silver flowering stage	0.635
	SRR8316905	Silver flowering stage	0.196
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.085
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	7.687
	SRR6706287	Light intensity 50%	9.603
	SRR6706288	Light intensity 20%	8.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.590
	CNS0095593	Slightly white alabastrum(diploid) 2	6.968
	CNS0095594	Slightly white alabastrum(diploid) 3	6.915
	CNS0095595	Whole white alabastrum(diploid) 2	44.105
	CNS0095596	Whole white alabastrum(diploid) 3	48.658
	CNS0095597	Whole white alabastrum(diploid) 4	63.487
	CNS0095598	Silvery flower (diploied) 1	1.144
	CNS0095599	Silvery flower (diploied) 2	3.290
	CNS0095600	Silvery flower (diploied) 3	1.121
	CNS0095601	Golden flower (diploid) 1	1.233
	CNS0095602	Golden flower (diploid) 2	1.624
	CNS0095603	Golden flower (diploid) 3	1.276
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.142
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.213
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.599
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.070
	CNS0095610	Silvery flower (tetraploid) 1	0.052
	CNS0095611	Silvery flower (tetraploid) 2	2.390
	CNS0095612	Silvery flower (tetraploid) 3	3.941
	CNS0095613	Golden flower (tetraploid) 1	0.405
	CNS0095614	Golden flower (tetraploid) 2	0.466
	CNS0095615	Golden flower (tetraploid) 3	3.438
CRA001975	CRR073297	Stem 1	3.451
	CRR073298	Stem 2	3.053
	CRR073299	Stem 3	0.821
	CRR073300	Leaf 1	25.769
	CRR073301	Leaf 2	14.082
	CRR073302	Leaf 3	6.779
	CRR073303	Juvenile bud 1	25.432
	CRR073304	Juvenile bud 2	16.758
	CRR073305	Juvenile bud 3	2.816
	CRR073306	Third green 1	5.355
	CRR073307	Third green 2	5.552
	CRR073308	Third green 3	7.085
	CRR073309	Second white 1	1.746
	CRR073310	Second white 2	3.173
	CRR073311	Second white 3	1.496
	CRR073312	Silver flowering 1	8.338
	CRR073313	Silver flowering 2	8.719
	CRR073314	Silver flowering 3	4.575
	CRR073315	Gold flowering 1	5.908
	CRR073316	Gold flowering 2	2.604
	CRR073317	Gold flowering 3	3.882
	CRR073318	Tawny withering 1	4.047
	CRR073319	Tawny withering 2	6.674
	CRR073320	Tawny withering 3	3.577