Gene detail

Detail information of GWHGAAZE022078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277269.1	0	PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Vitis vinifera]
Swissprot	tr\|Q0WPJ7\|RF298_ARATH	4E-179	Putative E3 ubiquitin-protein ligase RF298
trEMBL	tr\|F6HDJ7\|F6HDJ7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50368.1}
TAIR10	AT4G03000.2	1E-133	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66552682	66557412	+
GWHAAZE00000006	mRNA	66552682	66557412	+
GWHAAZE00000006	exon	66552682	66554739	+
GWHAAZE00000006	exon	66556523	66557412	+
GWHAAZE00000006	CDS	66552682	66554739	+
GWHAAZE00000006	CDS	66556523	66557062	+
GWHAAZE00000006	three_prime_UTR	66557063	66557412	+

Transcript Sequence
>GWHTAAZE022106 ATGGCATCGACGATTGCTAAGGCTGGTAGTTCCAATCAAGTGTCGCCTGCTATATCGGTACAAGAGAAGGGAAGTAGGAATAAGAGAAAATTTAGAGCTGAGCCGCCTATAGTGGACGCAGGCAAGATTATTTCTTCGCAGCTGAATGAAAGCCCAAGCTACGAGTTCTCAGCTGAGAAGTTCGATGTTAACCCAAGCCATGGACATTCGAGTGTGTGTGACATGTGTAGTGCTTGCCAAGACCATTCTGATGCCCTAAAACTTGACCTTGGATTATGTGCAATGGGGGCATCTGAGGTGGGGCCGAGCTTACCTAAAGAGGAGATAGTAGTTACAGATGAGTTCCATGATGCGGATTGGAGTGATCTTACAGAGACCCAGCTCGAAGAACTCGTTTTGTGCAATTTGGACACAATTTTCAAGAGCGCAATCAAGAAAATAGTTGCTTGCGGTTACACCGAAGAAATTGCTACCAAGGCTGTTTTAAGGTCTGGCCTTTGTTATGGGTTCAAAGACACTGTATCGAATATAGTGGACAACACATTAGTGTTTCTTAAGAACGGCCAAGAAGTTGATCAGTCAAGGGAGCATTATTTTGAGGATTTACAGCAGATGGAGAAGTACATATTGGCAGAATTAGTTTGTGTTCTTCGCGAGGTTAGGCCCTTTTTTAGCACGGGGGATGCAATGTGGTGCTTGTTGATATGTGACATGAACGTCTCACTTGCTTGCGCAATGGACAGTGATCCCTTCAGCAATTTAGTTGGTGAAGGGGACACAAATGGTACTTCCTCTGTTTATTCACAACCCCAGTCGAGAACAGAGGCCAAAAGTTCCGAAAATGTTCCAACTGCCTCCAAACCTAGTCATTCTATTTCTTGTACACATAGTTCTCAATCTGAGGTATCCCCCGTAGCAGGGGTTGAAAATACAAAACCAAAAAGTTCATCTGTTCTCAATGGACTTCTTGCAGAGAAAGAAGATCCAAATTCCCCATCCGATACTATTGATAAATCCTTCAGCGCTGCAGGAACATCCCAGTCTCATGACCCTGAAGAAAAGTTTACTGGTGGTAGAAAAATATCGGGCATTACCAAGAAAGAGTATATACTTCGCCAAAAGTCGATTCGTCTGGAGAAAAGCTACCGGACATATGGTTCTAAAGGGGCATCAAGATCTGGAAAACTAAGTAGTTTTGGAGGTTTGATGTTGGATAAGAAATTGAAGTCCGTGTCAGATTCAGGTTTGAATTTGAAGAATGCCTCCATAAAGATTAGTAAGGCAATGGGAGTCGATTTGCCGCAACAAAATGTACATAACAATCTTTCATCAAACGTAGCACTCCCTTCACCTGCAACATTTGGTCTGGAAACTGTTAACAATACAGTTTCTACTCCACCAAGAAATAATATCCCCTCTACATTACCTTCAACCAATGGCCCACCTGCGCTATCAGCAGCTGAAACTGAGCTTTCTCTTTCATTGCCAGTGAAGACCGGTGACAAGTCCTTGGGGCTTTGTGTGCCAAAGGACAGGAAGGATGAAATAATCTTGAAACTGGTTCCAAGAGTGCGGGAACTGCAAAGTCAGCTCCAAGAATGGACTGAATGGGCTAACCAGAAGGTTATGCAGGCGGCTCGTAGGTTGAGCAAAGACAAGGCCGAGCTTAAGACACTCAGGCAAGAAAAAGAAGAAGTGGAGCGGCTCAAGAAAGAGAAACAAACGTTGGAAGAGAGTACCATGAAAAAGCTATGTGAGATGGAGAATGCTTTGTGTAAGGCCAGTGGGCAGGTCGATCGTGCGAATGCTGCTGTCCGTAGGTTGGAGATGGAAAACATAACACTGAGGCAACAAATGGAGGGTGCCAAATTACGTGCTGCTGAGTCAGCTGCCAATTGTCAAGAGGTATCGAAGAGGGAGAAAAAGACGATGATGAAATTTCAGTCTTGGGAGAAGCAAAAAACCTTCTTGCAGGAAGAGCTTGTAGCTGAGAAACGCAAGCTGGCGCTGCTACAACAGGAACTGGAGCATGCTAAAGATCTCCGCGACCAACTTGAGGCCAAATGGAAACAGGAAGAAAAGGCAAAGGAAGAGTTACTCACACAAGCTACTACATTTAAAAAAGATAGAGAACAAATCGAAGCTTCAACTAAATCAAAGGAGGACGGAATTAGACTCAAAGCCGAAAAGAATCTTCAGAGATACAAGGACGATATCGAGAAGCTTGAGAAGGAATTATCCCAGTTGAGATTGAAGACAGACTCTTCGAAAATAGCAGCCCTTAGACGAGGCATTGATGGAAGCTATAATAAAGCGACAGACCTTAAAACCTCAACCACTACGAGTGAGTCTCAGATTCTATACATCTCTAAAATGGTGAAGGATTTTAAGGAATATTCTGCAAGTGGGGGTGTGAAAAGAGAACGGGAGTGTGTGATGTGCCTTTCAGAGGAGATGTCGGTTGTTTTTCTCCCGTGTGCCCATCAGGTTGTGTGTAGTAATTGCAACGAGCTCCACGAGAAGCAAGGAATGAAGGACTGCCCTTCTTGTAGGGGCCCGATTCAGAGGCGTATTTCTGTACGGTATGCTAGCTCATAAATTATATTTTTTGGAATAATTAATGATTTGTGGGACTCATTCTGAGATAGAATAATATGCTTTTGAGTCGGCTCTTTCAAAAGTGTAGACAAATGACAATTAAGCTTGCTATTATGTTTGCTTATGAAACAAGAGTAAAAGGGAAAAAAAGAAGGGAAAAAGACGCGTGCAGTGTGAGATTGTGGGGTTATAAAATGATGATTGCCCTTTCCATTAAATAAGATCATGGTGCTCTTATGGTTTGGTTTTCTTGATGTCAAACAATATATATATATATATGTTCCATAAGGTAAACTAAATTGTGGAGTCTGTTACTTCATTTTTGTTTGCTTTCCTTGTGGACTTTTAAA

Network for GWHGAAZE022078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	808	856	7.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.571
	SRR3591706	second leaf	7.951
	SRR3591707	mature leaf	15.891
	SRR3591708	Shoot apex	9.151
	SRR3591709	Stem	25.204
	SRR3591710	White floral bud	38.633
	SRR3591711	White flower	44.702
	SRR3591712	Green floral bud	32.736
	SRR3591713	Yellow flower	33.128
SRP173429	SRR8316895	Juvenile bud stage	14.180
	SRR8316896	Juvenile bud stage	22.441
	SRR8316897	Juvenile bud stage	10.038
	SRR8316894	Third green stage	10.203
	SRR8316900	Third green stage	29.868
	SRR8316901	Third green stage	27.890
	SRR8316898	Complete white stage	19.329
	SRR8316899	Complete white stage	46.549
	SRR8316903	Complete white stage	36.339
	SRR8316902	Silver flowering stage	22.121
	SRR8316904	Silver flowering stage	34.599
	SRR8316905	Silver flowering stage	15.418
	SRR8316906	Gold flowering stage	45.662
	SRR8316907	Gold flowering stage	44.982
	SRR8316908	Gold flowering stage	48.978
SRP132670	SRR6706286	Control	31.550
	SRR6706287	Light intensity 50%	29.980
	SRR6706288	Light intensity 20%	31.651
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.482
	CNS0095593	Slightly white alabastrum(diploid) 2	17.589
	CNS0095594	Slightly white alabastrum(diploid) 3	19.385
	CNS0095595	Whole white alabastrum(diploid) 2	18.096
	CNS0095596	Whole white alabastrum(diploid) 3	20.439
	CNS0095597	Whole white alabastrum(diploid) 4	17.889
	CNS0095598	Silvery flower (diploied) 1	25.757
	CNS0095599	Silvery flower (diploied) 2	23.927
	CNS0095600	Silvery flower (diploied) 3	64.525
	CNS0095601	Golden flower (diploid) 1	26.163
	CNS0095602	Golden flower (diploid) 2	51.745
	CNS0095603	Golden flower (diploid) 3	51.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.628
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.659
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.153
	CNS0095610	Silvery flower (tetraploid) 1	62.025
	CNS0095611	Silvery flower (tetraploid) 2	63.498
	CNS0095612	Silvery flower (tetraploid) 3	58.993
	CNS0095613	Golden flower (tetraploid) 1	35.668
	CNS0095614	Golden flower (tetraploid) 2	47.193
	CNS0095615	Golden flower (tetraploid) 3	50.619
CRA001975	CRR073297	Stem 1	21.863
	CRR073298	Stem 2	24.199
	CRR073299	Stem 3	19.019
	CRR073300	Leaf 1	31.572
	CRR073301	Leaf 2	28.270
	CRR073302	Leaf 3	22.806
	CRR073303	Juvenile bud 1	29.452
	CRR073304	Juvenile bud 2	25.252
	CRR073305	Juvenile bud 3	38.969
	CRR073306	Third green 1	28.095
	CRR073307	Third green 2	23.123
	CRR073308	Third green 3	28.183
	CRR073309	Second white 1	27.161
	CRR073310	Second white 2	36.885
	CRR073311	Second white 3	35.903
	CRR073312	Silver flowering 1	25.626
	CRR073313	Silver flowering 2	20.963
	CRR073314	Silver flowering 3	21.177
	CRR073315	Gold flowering 1	7.219
	CRR073316	Gold flowering 2	11.089
	CRR073317	Gold flowering 3	5.378
	CRR073318	Tawny withering 1	19.156
	CRR073319	Tawny withering 2	15.268
	CRR073320	Tawny withering 3	15.660