Gene detail

Detail information of GWHGAAZE022055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009113987.1	1.11787E-40	PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
Swissprot	tr\|Q9LTC5\|ERF98_ARATH	3E-38	Ethylene-responsive transcription factor ERF098
trEMBL	tr\|A0A078H4Y5\|A0A078H4Y5_BRANA	4E-41	BnaA09g16520D protein {ECO:0000313\|EMBL:CDY32941.1}
TAIR10	AT3G23220.1	3E-19	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66249288	66249668	+
GWHAAZE00000006	mRNA	66249288	66249668	+
GWHAAZE00000006	exon	66249288	66249668	+
GWHAAZE00000006	CDS	66249288	66249668	+

Transcript Sequence
>GWHTAAZE022083 ATGGTGAAGCCCAAGAATGAGAAAGACTCGCCGGAGGTCAAGTACAGAGGGGTCCGGAGGCGGCCGTGGGGCAAGTTCGCTGCGGAGATACGTGACTCGGCCAGGCACGGTCGCCGCATGTGGCTCGGCACTTTCAACACTGCCGAGGAAGCGGCTCGAGCCTACGACAGAGCTGCCTATGCCATGAGGGGTCAACTAGCCATCCTCAATTTCCCCGAGGAACACAATTCTGCTGCTGGCGCGGTTTCCTCGGATTCTCGTGTGGCTTCGTCATCATCTTCAGTTCAAGAAGAGGAAAAATTAGTCTTCGAACTCGAGTATTTTGATGATAAGTTGTTAGAAGAACTTCTTGGAAATGAAGAGGAGAAGGAAAAGAATTGA

Network for GWHGAAZE022055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	14	64	2.00E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.268
	SRR3591709	Stem	0.317
	SRR3591710	White floral bud	0.318
	SRR3591711	White flower	0.846
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.444
	SRR8316896	Juvenile bud stage	0.118
	SRR8316897	Juvenile bud stage	0.479
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.181
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	5.467
	SRR8316904	Silver flowering stage	0.298
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.341
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.013
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.377
	CNS0095593	Slightly white alabastrum(diploid) 2	0.487
	CNS0095594	Slightly white alabastrum(diploid) 3	0.419
	CNS0095595	Whole white alabastrum(diploid) 2	0.544
	CNS0095596	Whole white alabastrum(diploid) 3	0.735
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	2.016
	CNS0095599	Silvery flower (diploied) 2	0.298
	CNS0095600	Silvery flower (diploied) 3	0.104
	CNS0095601	Golden flower (diploid) 1	1.447
	CNS0095602	Golden flower (diploid) 2	0.150
	CNS0095603	Golden flower (diploid) 3	0.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.133
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.161
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.052
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.331
	CRR073298	Stem 2	0.789
	CRR073299	Stem 3	0.986
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.223
	CRR073308	Third green 3	0.094
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.468
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.585
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000