Gene detail

Detail information of GWHGAAZE022029

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529316.1	0	ethylene receptor, putative [Ricinus communis]
COG	YP_001520229.1	2E-43	two-component hybrid sensor and regulator histidine kinase
Swissprot	tr\|Q9ZTP3\|EIN4_ARATH	0	Protein EIN4
trEMBL	tr\|B9STJ7\|B9STJ7_RICCO	0	Ethylene receptor, putative {ECO:0000313\|EMBL:EEF33085.1}
TAIR10	AT3G04580.2	0	Signal transduction histidine kinase, hybrid-type, ethylene sensor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65940190	65943105	+
GWHAAZE00000006	mRNA	65940190	65943105	+
GWHAAZE00000006	exon	65940190	65941953	+
GWHAAZE00000006	exon	65942566	65943105	+
GWHAAZE00000006	CDS	65940190	65941953	+
GWHAAZE00000006	CDS	65942566	65943105	+

Transcript Sequence
>GWHTAAZE022057 ATGGATGCAATGTTGAAAACATTCGCATCTCTTCTGTTGATTTCAATCTTTGTGGTTTCATTTGCCAAAGCTGAAAACGGGCTCCCGAGGTGTAATTGTGAAGATGAGGGATTTTGGAGTGTTGAAAACATTTCGGAGTTGCAAAAGGTGAGTGATTTCTTGATTGCAGTGGCCTATTTCTCAATCCCAATTGAGCTCCTCTACTTTGTTAGCTGTTCAAATGTCCCTTTCAAATGGGTACTCCTTCAATTCATTGCCTTCATTGTTCTTTGTGGAATGACCCATTTGCTCAATGGCTGGACTTATGGACCCCACCCGTTTCAGCTAATGCTAGCCCTCACCATTTTCAAGTTCCTCACAGCTCTGGTCTCATTCGCCACTGCGATTACCCTTGTAACCCTCATCCCTTTGCTCCTCAAAGTTAAAGTGAGAGAGTTTATGTTGAAGAAGAAGACTTGGGATCTTGGCCGAGAGGTCCGAATCATAAAGAAACAGAAAGAAGCCGGGTTGCATGTTCGTATGCTCACACAAGAGATCCGCAAGTCGCTCGATCGGCATACGATATTGTACACAACTCTTGATAAGCTATCTGAGGTGTTGGATTTGCACAATTGTGCCATTTGGATGCCGAATGAGCATAGAACAATTATGAACCTGACCCACGTGTTAAAAGAGAGGGATAACTCATCACCTGCATATGATTGTTCGATCCCAACTAGTAACCCTGATGTTAGAAGGATTAAGGGGAGTGAAGAAGTGCAGATTCTCGATCCCGGTTCACCACTTGCTGCTGCAAGTAGTGGGGGGAGTGTTGAGCCCGGAGCTGTTGCAGCTATTAGGATGCCAATGCTAAAAGTTTGCGATTTCAAAGGTGGGACCCCTGAGATGATACGAATGTGTTACGCAATACTCGTTTTGGTTCTACCTAGCAGACAAGGTCGATTGTGGGGCAACCAAGAACTTGAAATCTTGACAGCGGTTGCTGATCAAGTGGCAGTGGCGCTCTCTCATGCTGCCGTTCTTGAAGAGTCTCAGCTCATGAGAGAGAAACTATCGGAGCAAAACCGAGCGCTGCTACAAGCTAGACAAGATGCAATGATGGCTAGCCAAGCGCGTGTTGCATTTCAGATGGTAATGAGCAATGGGATGAGAAGGCCAATGCACTCGATTATGGGCTTGGTTTCAATGATCCAAGATGAGAATTTGAATAGCCATCAACATTTGCTCGTTGATGCGATGGCGAAGACCAGTAATGTCCTCTTGGTTCTTATAAATGACGTGATGGATTCTTCATCGAGGGATAGTGGAAGATTCCCATTGGAGATGAAGTCTTTTCGGCTACGTTCAATGATAAAAGAAGCTGCATGTTTAGCCAAGTGCTTGTGTGTTTGTAGGGGATATGGCTTTGCCGTTGAGGTAGAGAGGTCTTTGCCCGATTATGTTATGGGGGACGAGAGAAGAGTTTTTCAGGTGATTTTGCATATGGTGGGGAATCTTTTGAATGGAGTTGATGGAAGAGGATGTTTAATGTTGAGGGCTTCCTCGGAGATTGCTAATAGTCAAGGAAGGAATGATCCGAGATGGGGGATTAGGAGACCAGGTTCATTGGATGGGTATGTTTATGTCAAGTTCGAGATTGGGATTAGTAAGAGTAGTCCTCATTTGGAGGGCTCGAGTTCAGCAATGTCGGTTCGGGATCGGAGACAGTTCAGTGGGAGAGTTGAGGAAGGCTTGAGCTTCAGTGTGTGCCAAAAACTAGTGCAGATGATGCAAGGGAATATTTGGGTAGTACCAAATCCCACGAATTTTGATCAAAGCATGGCCCTTGTTCTTCAATTTCAACTCCGGCCATCAATTGTAATAGGCATATCTGGCTCTGGAGAATCCTCGGAACACCCATATTCAAATCATCTCTTTATGGGCCTTCCAGTTCTTTTAGCTGATGGCGATGACGTAAATAGAGCCGTAACTCGAAAGCTCCTCGAGAAGTTAGGCTGCAATGTTTTGACTGTCTCAACCGGAGATGAATGCCTCAATGCTATTCACCCATCTGCATCTACCTTTCGAATCGTTTTCTTGGATCTTCACTTGCCTGATCTTGATGGGTTCGAAGTTGCCATAAGAATTCGCAAGTTCCGCAGCCACTGCTGGCCGTTGATCGTGGCGTTAATGGCGAGTGATAGCGATCAAATTTGGGAAAAATGCTTTCAAATTGGGATGAATGGAGTTATTCAGAAACCCGTTCTTTTGCAGGGGATTGCTGATGAGCTTAGAAGAGTACTCTCTCAAGCAAAGGTTCTGTAA

Network for GWHGAAZE022029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01590.27	GAF	184	335	4.80E-11
PF00072.25	Response_reg	644	751	1.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K14509	ETR, ERS	MAPK signaling pathway - plant	map04016
K14509	ETR, ERS	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0009723	biological_process	response to ethylene
GO:0005789	cellular_component	endoplasmic reticulum membrane
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0038199	molecular_function	ethylene receptor activity
GO:0051740	molecular_function	ethylene binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.265
	SRR3591706	second leaf	2.366
	SRR3591707	mature leaf	1.049
	SRR3591708	Shoot apex	8.116
	SRR3591709	Stem	24.362
	SRR3591710	White floral bud	11.279
	SRR3591711	White flower	26.645
	SRR3591712	Green floral bud	16.594
	SRR3591713	Yellow flower	27.027
SRP173429	SRR8316895	Juvenile bud stage	7.802
	SRR8316896	Juvenile bud stage	9.595
	SRR8316897	Juvenile bud stage	3.102
	SRR8316894	Third green stage	5.883
	SRR8316900	Third green stage	17.109
	SRR8316901	Third green stage	14.117
	SRR8316898	Complete white stage	3.519
	SRR8316899	Complete white stage	26.737
	SRR8316903	Complete white stage	6.920
	SRR8316902	Silver flowering stage	4.955
	SRR8316904	Silver flowering stage	7.022
	SRR8316905	Silver flowering stage	3.786
	SRR8316906	Gold flowering stage	6.159
	SRR8316907	Gold flowering stage	8.088
	SRR8316908	Gold flowering stage	9.068
SRP132670	SRR6706286	Control	14.323
	SRR6706287	Light intensity 50%	15.650
	SRR6706288	Light intensity 20%	16.372
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.756
	CNS0095593	Slightly white alabastrum(diploid) 2	12.970
	CNS0095594	Slightly white alabastrum(diploid) 3	7.570
	CNS0095595	Whole white alabastrum(diploid) 2	13.065
	CNS0095596	Whole white alabastrum(diploid) 3	12.826
	CNS0095597	Whole white alabastrum(diploid) 4	12.531
	CNS0095598	Silvery flower (diploied) 1	12.062
	CNS0095599	Silvery flower (diploied) 2	9.602
	CNS0095600	Silvery flower (diploied) 3	27.507
	CNS0095601	Golden flower (diploid) 1	11.256
	CNS0095602	Golden flower (diploid) 2	25.258
	CNS0095603	Golden flower (diploid) 3	27.596
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.571
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.646
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.652
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.159
	CNS0095610	Silvery flower (tetraploid) 1	35.688
	CNS0095611	Silvery flower (tetraploid) 2	30.423
	CNS0095612	Silvery flower (tetraploid) 3	5.442
	CNS0095613	Golden flower (tetraploid) 1	15.973
	CNS0095614	Golden flower (tetraploid) 2	38.153
	CNS0095615	Golden flower (tetraploid) 3	10.449
CRA001975	CRR073297	Stem 1	30.076
	CRR073298	Stem 2	30.429
	CRR073299	Stem 3	31.536
	CRR073300	Leaf 1	35.916
	CRR073301	Leaf 2	32.614
	CRR073302	Leaf 3	29.169
	CRR073303	Juvenile bud 1	37.724
	CRR073304	Juvenile bud 2	22.522
	CRR073305	Juvenile bud 3	39.068
	CRR073306	Third green 1	1.953
	CRR073307	Third green 2	1.878
	CRR073308	Third green 3	3.295
	CRR073309	Second white 1	0.949
	CRR073310	Second white 2	0.396
	CRR073311	Second white 3	0.674
	CRR073312	Silver flowering 1	2.117
	CRR073313	Silver flowering 2	2.184
	CRR073314	Silver flowering 3	5.757
	CRR073315	Gold flowering 1	0.079
	CRR073316	Gold flowering 2	0.359
	CRR073317	Gold flowering 3	0.683
	CRR073318	Tawny withering 1	4.879
	CRR073319	Tawny withering 2	6.575
	CRR073320	Tawny withering 3	5.365