Gene detail

Detail information of GWHGAAZE022018

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI26376.3	2.4666E-126	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q682V0\|XRCC4_ARATH	2E-100	DNA repair protein XRCC4
trEMBL	tr\|D7T7A5\|D7T7A5_VITVI	9E-127	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26376.3}
TAIR10	AT3G23100.2	6E-76	homolog of human DNA ligase iv-binding protein XRCC4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65753324	65757672	+
GWHAAZE00000006	mRNA	65753324	65757672	+
GWHAAZE00000006	exon	65753324	65753543	+
GWHAAZE00000006	exon	65753623	65753765	+
GWHAAZE00000006	exon	65754803	65754931	+
GWHAAZE00000006	exon	65755729	65755851	+
GWHAAZE00000006	exon	65757128	65757366	+
GWHAAZE00000006	exon	65757464	65757672	+
GWHAAZE00000006	five_prime_UTR	65753324	65753401	+
GWHAAZE00000006	CDS	65753402	65753543	+
GWHAAZE00000006	CDS	65753623	65753765	+
GWHAAZE00000006	CDS	65754803	65754931	+
GWHAAZE00000006	CDS	65755729	65755851	+
GWHAAZE00000006	CDS	65757128	65757361	+
GWHAAZE00000006	three_prime_UTR	65757362	65757366	+
GWHAAZE00000006	three_prime_UTR	65757464	65757672	+

Transcript Sequence
>GWHTAAZE022044 GTTTAAATAGAATCCCAATCCTGAAAGCGGGAAGTTTTGGATTCTCCCTCTCTATAAAACACACCAAAACCGTCGACAATGGAATCACCTAGGCACACATGCTTAAAACTCCAAATCTCCAACAACAACTCCGATCAACAAATCTTCGTCAAAGCCACCTGGTTTTCCGATCACTTCGATCTCTCCGTCACCGACGGTCTCCTCGCCTGGATTTGCCACGCATCCAAGGATGAGGTTAGAGACAGAGCATCGCAGTGGGACCAATCGGTCTCAGAATACATTGATTTGGCCGAAAAATACCTAGGGTTTCAACAGCCTGGTTCCGTTTACGGCTTTTCTGATGCCGGAGATGGACATAAAAGACTATCATGGACATTTGAAAGAGAGGGGACCAAGCTGGAATGGAGATGGAAATGTCAACCATCACCTGATAGTAAGAAAACAACGATAGGGATCTTGGACTTTCTTATGGATGCAAACATACGATTAAGTGAGGAAGTTGTTAGAAAGAGTCGCACATCTGAGATGCTAAAAGTGGAGGCTGAGAAGTGTTTAGCACAAAGTGAGAAATTCAACCACGAGAAGGAAGAGTTTGAATCTGCAATCTATGCAAAGTTTCTTGGAATCCTAAATACAAAGAAAGAAAAACTCCGAGAACTCCGGGACCGGCTTGCAAAGAAGGAAGCTTCCGGTAAATTGCCAGCAGAGGATGAAGGAGAGTCGACAGACAAAACAGAGAGTTTCGATGAGAAAACTGACGACGATGAAGAAAGTGATGAAGATCCCCCTAAGAATTTGAGCGGCAACTCAAAGGATGTTCCAGCTAGTAGATCAAGTGGTCAAAAATAATATAAATTATGATTTAGCGTTGTACAGAAGAACGGGCTGAAAGATTAACAGTGAGATGATAGGAGTAATATTGTGCTTGCACGACTTGTCAGCCTTATCCTGCTGATCATGATTAGGGAACTTGTTTTACCAAAAGAACCTCTAGATGCATCATTCATGCACATTGAGAACTAATAGTGTGACTGTATCACTGTTTTTAATCAGAGTTCTTGTT

Network for GWHGAAZE022018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06632.13	XRCC4	19	242	5.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10886	XRCC4	Non-homologous end-joining	map03450

Gene Ontology

GO term	Ontology	Name
GO:0006302	biological_process	double-strand break repair
GO:0006310	biological_process	DNA recombination
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.629
	SRR3591706	second leaf	1.435
	SRR3591707	mature leaf	0.937
	SRR3591708	Shoot apex	6.308
	SRR3591709	Stem	1.196
	SRR3591710	White floral bud	4.282
	SRR3591711	White flower	6.880
	SRR3591712	Green floral bud	4.500
	SRR3591713	Yellow flower	5.984
SRP173429	SRR8316895	Juvenile bud stage	8.496
	SRR8316896	Juvenile bud stage	9.914
	SRR8316897	Juvenile bud stage	2.804
	SRR8316894	Third green stage	3.716
	SRR8316900	Third green stage	14.300
	SRR8316901	Third green stage	10.117
	SRR8316898	Complete white stage	3.553
	SRR8316899	Complete white stage	12.051
	SRR8316903	Complete white stage	6.467
	SRR8316902	Silver flowering stage	4.933
	SRR8316904	Silver flowering stage	6.733
	SRR8316905	Silver flowering stage	3.745
	SRR8316906	Gold flowering stage	12.422
	SRR8316907	Gold flowering stage	12.862
	SRR8316908	Gold flowering stage	10.412
SRP132670	SRR6706286	Control	10.537
	SRR6706287	Light intensity 50%	10.973
	SRR6706288	Light intensity 20%	11.164
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.328
	CNS0095593	Slightly white alabastrum(diploid) 2	7.863
	CNS0095594	Slightly white alabastrum(diploid) 3	10.595
	CNS0095595	Whole white alabastrum(diploid) 2	8.182
	CNS0095596	Whole white alabastrum(diploid) 3	9.927
	CNS0095597	Whole white alabastrum(diploid) 4	6.874
	CNS0095598	Silvery flower (diploied) 1	8.296
	CNS0095599	Silvery flower (diploied) 2	8.756
	CNS0095600	Silvery flower (diploied) 3	9.820
	CNS0095601	Golden flower (diploid) 1	8.995
	CNS0095602	Golden flower (diploid) 2	9.202
	CNS0095603	Golden flower (diploid) 3	10.831
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.771
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.041
	CNS0095610	Silvery flower (tetraploid) 1	6.272
	CNS0095611	Silvery flower (tetraploid) 2	6.441
	CNS0095612	Silvery flower (tetraploid) 3	6.248
	CNS0095613	Golden flower (tetraploid) 1	4.876
	CNS0095614	Golden flower (tetraploid) 2	6.746
	CNS0095615	Golden flower (tetraploid) 3	4.923
CRA001975	CRR073297	Stem 1	11.474
	CRR073298	Stem 2	9.037
	CRR073299	Stem 3	10.466
	CRR073300	Leaf 1	10.202
	CRR073301	Leaf 2	8.104
	CRR073302	Leaf 3	7.065
	CRR073303	Juvenile bud 1	10.854
	CRR073304	Juvenile bud 2	8.336
	CRR073305	Juvenile bud 3	7.442
	CRR073306	Third green 1	2.655
	CRR073307	Third green 2	2.369
	CRR073308	Third green 3	3.493
	CRR073309	Second white 1	2.915
	CRR073310	Second white 2	5.186
	CRR073311	Second white 3	4.311
	CRR073312	Silver flowering 1	4.739
	CRR073313	Silver flowering 2	3.968
	CRR073314	Silver flowering 3	2.834
	CRR073315	Gold flowering 1	3.677
	CRR073316	Gold flowering 2	6.163
	CRR073317	Gold flowering 3	2.175
	CRR073318	Tawny withering 1	8.297
	CRR073319	Tawny withering 2	7.137
	CRR073320	Tawny withering 3	7.485