Gene detail

Detail information of GWHGAAZE022000

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009758485.1	PREDICTED: protein transport protein SEC23 [Nicotiana sylvestris]
trEMBL	tr\|K4BDW2\|K4BDW2_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g005380.2.1}
TAIR10	AT5G43670.1	Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65476888	65480967	+
GWHAAZE00000006	mRNA	65476888	65480967	+
GWHAAZE00000006	exon	65476888	65477604	+
GWHAAZE00000006	exon	65479310	65480578	+
GWHAAZE00000006	exon	65480671	65480967	+
GWHAAZE00000006	CDS	65476888	65477604	+
GWHAAZE00000006	CDS	65479310	65480578	+
GWHAAZE00000006	CDS	65480671	65480967	+

Transcript Sequence
>GWHTAAZE022026 ATGGATTTCCTCGAATTGGAAGCGATCGAAGGCCTCCGATGGTCGTGGAATTCATGGCCAATTTCCAAATCCGAATCGAATTCCCTTGTAGTCCCATTATCCATCATGTGCACTCCATTAATGCAACTCAACGAGCTACCAATACTCCCTTACGACCCCCTCACCTGCAACCGATGCGCCGCCGTATTAAACCCTTACGCTAGGGTTGATTATCAATCAAGAATCTGGATTTGCCCCTTTTGTTACAATAGGAATTCGTTTCCCCGATCGTATTCCAACATCGGGGAAAACAATATCCCGGCCGAGCTTTTTCCTACTTATAGTACAGTCGAGTATCAATTGGGTAAAAAAGGATTGACATTGAATACAAATAGTCATAACTGGGGGAATGGGAGATTGTCATCTTCGAATTCGATGTCGGGAGAAATCTCATCGCCTTCGTTGGTTTCGTCTTTTTCGTCTAATTCGCTGTCGGGTTTGGGGTTGGATTCGAGAGGGGCGGGGCCGGGGTTTGTGTTTGTGGTGGATGCTTGTTCGGTGGACGAGGAGCTTAGGGTGTTAAAAAATGAGTTGTTACATATAGTGGCGGATTTGCCGGATAATTGTTTGGTGGGTTTGGTTGTGTTTGATTCAATGGTGAGGGTTTTTGATCTTGGGTTCAGTGAGTGCTTTAGAGTTGTGGTGTTTCACGGTGAGAGGGAGATTTCGTCTAATCAGATCAAACAGATGCTTGGGATCCATTATGTGAAGCAACAAGTCGGAAAGGCACATGCCATTCAGAAACAAGGTTTCCTTTTACCGTTATCTGAATGTGAGTTCAACATAACTACTGCAATTGAAGATATCCAATCTTCATCACAGGCTATAACAGGCCATCGTCCTCAACGGGCCACAGGGGCTGCAATATCAGTTAGTCTCGGGCTTCTAGAAGGATGTTTGGGTACACCTGGGTCTCGCATCATGGTCTTCACATCCGGGCCTGCAACTATTGGACCAGGGATGATTGTAGACACGGATCTCGGTAATGATATCAGAACTCACCGAGACCTTAATAGTGGCTATGCAGCTTACTACAGAAAGTCTTGTGAGTTCTACAAACGAATATCAGAGAGGTTAACCAATTCATCTATTGTTCTTGACCTTTTTGCTTGTTCTCTTGATCAAGTTGGTGCAGTGGAGTTACGGTCCCCTGTGGAGAGCTCAGGTGGGTTCATGATGTTAGGGGAGTCATTTGAATCAGACCAATTTAGAAAATGCTTGCGCCACTTGTTCAACCGGGATGAGGATGGGAACTTAAAGATGTGCTTTGATGCAACTATTGAGATAGTGACAACTAAAGATGTGAAAATCTGCGGGGCCCTAGGTCCCTGTGTTTCTCTTCGGAAAAGCAATGGGTCCGTGTGTGTAAAGGAAGTCGGTGAGGGTGGTACTTATATATGGAAATTGGGTACACTCAATAACAAAACATGCATAGCTTTCTTCTTCCAAGTGGGTGATGAGCAAAAAGCCCAGCCTAGCTCCGCATTTTTTATACAGTTCATAACAAGGTATCGACATGGAAACATGGGAATCCGCGAAAGAGTCACAACTGCTGCAAGGCGGTGGGTCGGGACCCACTCACCAGAAATTAATGCCGGGTTCGACCAAGAAGCCGCAGCCTCGGTCATGGCTAGGCTTGCAATCCGTGAAACTGAGAGGAGCTTCACTCATGATGTTATCAAATGGCTTGACCAAATGTTGATTCGTTTCGCCTCAAAATTCGGAGATTATGTGCAAGAAGATCCATCTTCATTCCGTCTTTCCTCCAATTTCTCTCTTTACCCACAATTTATGTATTATTTAAGGAGGTCCCAGTTTATTGACGTTTTTAACAGCAGCCCCGATGAGTCTGCCTTTTTCCGCTTGATGTTAAACCGTGAAGGGGTCGTCAATTCCCTTATAATGATTCAACCTACTCTTTTCAAATATTCATTTGATGGACCGCCCATTGCTCAATGGAGAAAGCTCGGTTATGAGCAGGACCCAAACCAGGAAAGTTTCAGAATGCTGTTGGAAGCCCCAGTTCTCGACGCAGAGCAACTAGTGGCTGAGCGGGTCCCAGTTCCAAAGCTTATTAAATGTGATCAACACAGTAGTCAGGCGAGGTTTCTACTTGCCAAGTTGAATCCATCTGTTACGCAGAACACCCAAAATTATATGGATGGCACGGAGATTATACTCACTGATGATGTGAGCTTGCAAGTTTTTATAGAGCACTTGCAAGCTCTGGCGGTGCAGGGTTGA

Network for GWHGAAZE022000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04810.16	zf-Sec23_Sec24	53	91	2.90E-14
PF04811.16	Sec23_trunk	169	424	5.10E-56
PF08033.13	Sec23_BS	436	536	1.00E-22
PF04815.16	Sec23_helical	548	646	8.80E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14006	SEC23	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0030127	cellular_component	COPII vesicle coat
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.169
	SRR3591706	second leaf	7.114
	SRR3591707	mature leaf	7.784
	SRR3591708	Shoot apex	8.340
	SRR3591709	Stem	9.321
	SRR3591710	White floral bud	11.925
	SRR3591711	White flower	12.888
	SRR3591712	Green floral bud	11.166
	SRR3591713	Yellow flower	12.012
SRP173429	SRR8316895	Juvenile bud stage	4.857
	SRR8316896	Juvenile bud stage	6.454
	SRR8316897	Juvenile bud stage	3.373
	SRR8316894	Third green stage	3.553
	SRR8316900	Third green stage	8.893
	SRR8316901	Third green stage	7.815
	SRR8316898	Complete white stage	2.508
	SRR8316899	Complete white stage	13.942
	SRR8316903	Complete white stage	5.643
	SRR8316902	Silver flowering stage	3.917
	SRR8316904	Silver flowering stage	6.189
	SRR8316905	Silver flowering stage	2.659
	SRR8316906	Gold flowering stage	9.491
	SRR8316907	Gold flowering stage	8.196
	SRR8316908	Gold flowering stage	10.379
SRP132670	SRR6706286	Control	13.691
	SRR6706287	Light intensity 50%	13.704
	SRR6706288	Light intensity 20%	13.961
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.546
	CNS0095593	Slightly white alabastrum(diploid) 2	3.897
	CNS0095594	Slightly white alabastrum(diploid) 3	4.018
	CNS0095595	Whole white alabastrum(diploid) 2	4.204
	CNS0095596	Whole white alabastrum(diploid) 3	3.561
	CNS0095597	Whole white alabastrum(diploid) 4	3.083
	CNS0095598	Silvery flower (diploied) 1	6.051
	CNS0095599	Silvery flower (diploied) 2	3.889
	CNS0095600	Silvery flower (diploied) 3	15.129
	CNS0095601	Golden flower (diploid) 1	3.809
	CNS0095602	Golden flower (diploid) 2	12.579
	CNS0095603	Golden flower (diploid) 3	12.740
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.435
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.743
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.441
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.939
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.718
	CNS0095610	Silvery flower (tetraploid) 1	14.431
	CNS0095611	Silvery flower (tetraploid) 2	16.689
	CNS0095612	Silvery flower (tetraploid) 3	13.740
	CNS0095613	Golden flower (tetraploid) 1	6.561
	CNS0095614	Golden flower (tetraploid) 2	13.130
	CNS0095615	Golden flower (tetraploid) 3	13.060
CRA001975	CRR073297	Stem 1	11.289
	CRR073298	Stem 2	9.365
	CRR073299	Stem 3	9.009
	CRR073300	Leaf 1	11.674
	CRR073301	Leaf 2	9.839
	CRR073302	Leaf 3	10.589
	CRR073303	Juvenile bud 1	10.090
	CRR073304	Juvenile bud 2	6.346
	CRR073305	Juvenile bud 3	13.458
	CRR073306	Third green 1	4.665
	CRR073307	Third green 2	4.068
	CRR073308	Third green 3	4.411
	CRR073309	Second white 1	5.296
	CRR073310	Second white 2	3.955
	CRR073311	Second white 3	5.473
	CRR073312	Silver flowering 1	4.922
	CRR073313	Silver flowering 2	6.404
	CRR073314	Silver flowering 3	4.486
	CRR073315	Gold flowering 1	3.498
	CRR073316	Gold flowering 2	7.437
	CRR073317	Gold flowering 3	6.975
	CRR073318	Tawny withering 1	9.458
	CRR073319	Tawny withering 2	7.295
	CRR073320	Tawny withering 3	6.550