Detail information of GWHGAAZE021998


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99147.14.56482E-95unnamed protein product [Coffea canephora]
Swissprottr|P32294|AX22B_VIGRR6E-84Auxin-induced protein 22B
trEMBLtr|A0A068TSZ6|A0A068TSZ6_COFCA2E-95Auxin-responsive protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT1G04240.15E-61AUX/IAA transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6544068165441651-
GWHAAZE00000006mRNA6544068165441651-
GWHAAZE00000006exon6544146165441651-
GWHAAZE00000006exon6544098665441312-
GWHAAZE00000006exon6544068165440756-
GWHAAZE00000006CDS6544146165441651-
GWHAAZE00000006CDS6544098665441312-
GWHAAZE00000006CDS6544068165440756-
Transcript Sequence

Network for GWHGAAZE021998

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA371945.70E-53
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
K14484IAA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.038
SRR3591706second leaf33.424
SRR3591707mature leaf44.883
SRR3591708Shoot apex28.180
SRR3591709Stem166.842
SRR3591710White floral bud21.914
SRR3591711White flower56.273
SRR3591712Green floral bud15.969
SRR3591713Yellow flower38.791
SRP173429 SRR8316895Juvenile bud stage 3.249
SRR8316896Juvenile bud stage 14.940
SRR8316897Juvenile bud stage 7.627
SRR8316894Third green stage 5.438
SRR8316900Third green stage 22.533
SRR8316901Third green stage 21.378
SRR8316898Complete white stage 3.626
SRR8316899Complete white stage 4.765
SRR8316903Complete white stage 7.910
SRR8316902Silver flowering stage79.135
SRR8316904Silver flowering stage75.076
SRR8316905Silver flowering stage46.832
SRR8316906Gold flowering stage 233.825
SRR8316907Gold flowering stage 93.618
SRR8316908Gold flowering stage 224.357
SRP132670SRR6706286Control15.837
SRR6706287Light intensity 50%11.578
SRR6706288Light intensity 20%10.484
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.830
CNS0095593Slightly white alabastrum(diploid) 210.560
CNS0095594Slightly white alabastrum(diploid) 326.250
CNS0095595Whole white alabastrum(diploid) 227.380
CNS0095596Whole white alabastrum(diploid) 318.011
CNS0095597Whole white alabastrum(diploid) 424.680
CNS0095598Silvery flower (diploied) 112.108
CNS0095599Silvery flower (diploied) 29.565
CNS0095600Silvery flower (diploied) 324.091
CNS0095601Golden flower (diploid) 112.811
CNS0095602Golden flower (diploid) 227.272
CNS0095603Golden flower (diploid) 327.359
CNS0095604Slightly white alabastrum(tetraploid) 116.210
CNS0095605Slightly white alabastrum(tetraploid) 213.886
CNS0095606Slightly white alabastrum(tetraploid) 310.403
CNS0095607Whole white alabastrum(tetraploid) 127.048
CNS0095608Whole white alabastrum(tetraploid) 215.786
CNS0095609Whole white alabastrum(tetraploid) 317.779
CNS0095610Silvery flower (tetraploid) 121.235
CNS0095611Silvery flower (tetraploid) 217.717
CNS0095612Silvery flower (tetraploid) 320.499
CNS0095613Golden flower (tetraploid) 113.977
CNS0095614Golden flower (tetraploid) 215.345
CNS0095615Golden flower (tetraploid) 315.445
CRA001975CRR073297Stem 137.687
CRR073298Stem 229.993
CRR073299Stem 379.381
CRR073300Leaf 123.484
CRR073301Leaf 236.328
CRR073302Leaf 327.208
CRR073303Juvenile bud 15.601
CRR073304Juvenile bud 26.209
CRR073305Juvenile bud 35.146
CRR073306Third green 1453.015
CRR073307Third green 2384.208
CRR073308Third green 3329.687
CRR073309Second white 1113.146
CRR073310Second white 2129.049
CRR073311Second white 333.695
CRR073312Silver flowering 17.837
CRR073313Silver flowering 25.559
CRR073314Silver flowering 36.859
CRR073315Gold flowering 193.888
CRR073316Gold flowering 254.785
CRR073317Gold flowering 329.811
CRR073318Tawny withering 190.228
CRR073319Tawny withering 290.814
CRR073320Tawny withering 374.163