Gene detail

Detail information of GWHGAAZE021997

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011091103.1	PREDICTED: probable alpha-mannosidase I MNS4 [Sesamum indicum]
Swissprot	tr\|Q9FG93\|MNS4_ARATH	Probable alpha-mannosidase I MNS4
trEMBL	tr\|A0A022R2H0\|A0A022R2H0_ERYGU	alpha-1,2-Mannosidase {ECO:0000256\|RuleBase:RU361193}
TAIR10	AT5G43710.1	Glycosyl hydrolase family 47 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65424066	65432668	+
GWHAAZE00000006	mRNA	65424066	65432668	+
GWHAAZE00000006	exon	65424066	65424203	+
GWHAAZE00000006	exon	65425037	65425156	+
GWHAAZE00000006	exon	65425233	65425325	+
GWHAAZE00000006	exon	65425713	65425799	+
GWHAAZE00000006	exon	65426101	65426191	+
GWHAAZE00000006	exon	65427120	65427163	+
GWHAAZE00000006	exon	65428099	65428171	+
GWHAAZE00000006	exon	65428368	65428477	+
GWHAAZE00000006	exon	65428920	65428970	+
GWHAAZE00000006	exon	65429563	65429651	+
GWHAAZE00000006	exon	65429781	65429862	+
GWHAAZE00000006	exon	65429961	65430074	+
GWHAAZE00000006	exon	65430455	65430534	+
GWHAAZE00000006	exon	65431217	65431352	+
GWHAAZE00000006	exon	65431676	65431746	+
GWHAAZE00000006	exon	65431877	65432123	+
GWHAAZE00000006	exon	65432555	65432668	+
GWHAAZE00000006	CDS	65424066	65424203	+
GWHAAZE00000006	CDS	65425037	65425156	+
GWHAAZE00000006	CDS	65425233	65425325	+
GWHAAZE00000006	CDS	65425713	65425799	+
GWHAAZE00000006	CDS	65426101	65426191	+
GWHAAZE00000006	CDS	65427120	65427163	+
GWHAAZE00000006	CDS	65428099	65428171	+
GWHAAZE00000006	CDS	65428368	65428477	+
GWHAAZE00000006	CDS	65428920	65428970	+
GWHAAZE00000006	CDS	65429563	65429651	+
GWHAAZE00000006	CDS	65429781	65429862	+
GWHAAZE00000006	CDS	65429961	65430074	+
GWHAAZE00000006	CDS	65430455	65430534	+
GWHAAZE00000006	CDS	65431217	65431352	+
GWHAAZE00000006	CDS	65431676	65431746	+
GWHAAZE00000006	CDS	65431877	65432123	+
GWHAAZE00000006	CDS	65432555	65432668	+

Transcript Sequence
>GWHTAAZE022023 ATGGAAGCTGCAAAATCACGGATTCCATTCTCTTTGTTGCTGCTGCTGCAGCTCTTATTAATTTCTTCGGACGTTTTCATCTGCGTAACTCTCGCAGAGGGCGTCACTCCCGAGGAAGCCAAGCAGTTCAGAGATGAGGTGCGTGGAATGTTCTATCATGCATTTGATGGATATATGGATCATGCTTTTCCACGTGATGAGTTAAAACCGCTAACATGTGAAGGAGAAGATACACTTGGCGGCTATGCTTTAACGTTGATTGACTCCTTAGACACTTTGGCTTTGCTGGGTGACCGAGAGCGCTTCATCACCTCGGTTGAGTGGATTGGCAAAAATCTTCGGTTTGATATCAACAAGACGGTTTCTCTCTTTGAAACTACGATCCGTATTCTTGGAGGTTTACTTTCTGCTCATCTCATTGCAAGTGATTATGCTACGGGAATGAGGGTTCCTTCATATGAAGATGAATTACTGAACTTGGCCGAGGATCTAGCCCGGAGATTGTTACCGGCATTTGATACTCCTACTGGACAATATGCTCGTCATTTTACCATGTATCTTGCGTGTAGCAAGATAACGTCGACGGCCGGTGGTGGGACTTTGACGTTAGAATTTGGAGTGCTTAGCCGCTTAACAAATGATCCAATTTTTGAGCAAGTTACAAAGAATGCTGTGCGTGGAATATGGGCTCGCCGTTCAGGGATTAATCTGGTTGGTGCTCATATTGATGTATTTACTGGTGAATGGACTCAAAAGGATGCTGGAATAGGAACAAGTATTGACTCTTTTTACGAGTATCTTTTGAAGGCTTACCTATTATTTGGAGATGAAGAGTATCTCTTCATCTTCCAAGAAGCTTATGGAGCTGCAATGCACTACCTTTACAATGATCCTTGGTATGTGGAGGTAAATATGAATTCTGCCGCGCTTGTTTGGCCATTATTTAACAGTTTGCAGGCATTCTGGCCAGGCCTTCAGGTTCTAGCTGGGGATATTGATCCTGCTATTCGAACACATACTGCTTTCTTTAGCGTCTGGAAAAGATATGGCTTCACTCCAGAAGGTTTCAATCTTGCGACACTTAATGTTCAGCATGGTCAAAAGAGCTACCCATTGCGTCCAGAGCTAATGGAGAGCACCTATTGGCTCTACAAAGCTACCAGGGATCCCAGGTATCTCGATGCTGGAAGGGACATGGTCACCAGTTTGCAATATGGAGCAAAATGCACTTGCGGATATTGTCATATATCAGATGTAGAGTTTCACAAACAGGAAGACCACATGGAGAGCTTTTTCTTAGCTGAGACAGTTAAATATTTGTGGCTTCTTTTCGATTTGGCTTCCGGTCCAGACAACCTCGTTGAAAATGGGCCATACAAATACATCTTCAGCACTGAAGGCCACTTATTGCCTGCAACTCCACAAATATCTTTAGTAAGCGAACATTGTTCTTATTTTGGGGCATACTGTAGAAGCGCCAATTTGAAACAGGAATCCCATAGCCTTGACATTTCAAAGGATTCTCTAGAAAGTAATGACAGTAGATTCCATACAGCCCTTGGTCCCACCAGTTTTTTATCACACTCAAGCTTTCAGAAATCCAATTCTGGCATAGGCTTGATTAAGCCTCTTATGGCTTACAAGCAAATTGTTGAGAAGATTGAAGGTTCTGATCAACAGCCAACTGGGTTCAATTTGTGGTTCGGAATCAATTCAGATGCTGGACTCGGGGCTCAGTAG

Network for GWHGAAZE021997

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01532.21	Glyco_hydro_47	50	471	2.90E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10085	EDEM2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0004571	molecular_function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.015
	SRR3591706	second leaf	7.423
	SRR3591707	mature leaf	5.975
	SRR3591708	Shoot apex	11.125
	SRR3591709	Stem	7.005
	SRR3591710	White floral bud	10.218
	SRR3591711	White flower	8.698
	SRR3591712	Green floral bud	10.419
	SRR3591713	Yellow flower	4.487
SRP173429	SRR8316895	Juvenile bud stage	7.606
	SRR8316896	Juvenile bud stage	10.385
	SRR8316897	Juvenile bud stage	3.905
	SRR8316894	Third green stage	4.391
	SRR8316900	Third green stage	10.384
	SRR8316901	Third green stage	10.889
	SRR8316898	Complete white stage	4.788
	SRR8316899	Complete white stage	15.180
	SRR8316903	Complete white stage	7.181
	SRR8316902	Silver flowering stage	3.309
	SRR8316904	Silver flowering stage	4.787
	SRR8316905	Silver flowering stage	2.767
	SRR8316906	Gold flowering stage	7.039
	SRR8316907	Gold flowering stage	6.417
	SRR8316908	Gold flowering stage	6.151
SRP132670	SRR6706286	Control	6.746
	SRR6706287	Light intensity 50%	7.950
	SRR6706288	Light intensity 20%	9.258
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.737
	CNS0095593	Slightly white alabastrum(diploid) 2	8.538
	CNS0095594	Slightly white alabastrum(diploid) 3	6.036
	CNS0095595	Whole white alabastrum(diploid) 2	7.814
	CNS0095596	Whole white alabastrum(diploid) 3	5.049
	CNS0095597	Whole white alabastrum(diploid) 4	6.596
	CNS0095598	Silvery flower (diploied) 1	8.998
	CNS0095599	Silvery flower (diploied) 2	5.227
	CNS0095600	Silvery flower (diploied) 3	8.573
	CNS0095601	Golden flower (diploid) 1	5.786
	CNS0095602	Golden flower (diploid) 2	7.894
	CNS0095603	Golden flower (diploid) 3	8.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.221
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.717
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.405
	CNS0095610	Silvery flower (tetraploid) 1	5.235
	CNS0095611	Silvery flower (tetraploid) 2	6.147
	CNS0095612	Silvery flower (tetraploid) 3	4.403
	CNS0095613	Golden flower (tetraploid) 1	1.894
	CNS0095614	Golden flower (tetraploid) 2	4.674
	CNS0095615	Golden flower (tetraploid) 3	2.176
CRA001975	CRR073297	Stem 1	10.596
	CRR073298	Stem 2	10.634
	CRR073299	Stem 3	7.887
	CRR073300	Leaf 1	11.090
	CRR073301	Leaf 2	10.974
	CRR073302	Leaf 3	8.286
	CRR073303	Juvenile bud 1	8.209
	CRR073304	Juvenile bud 2	5.291
	CRR073305	Juvenile bud 3	8.198
	CRR073306	Third green 1	2.237
	CRR073307	Third green 2	2.154
	CRR073308	Third green 3	2.845
	CRR073309	Second white 1	2.212
	CRR073310	Second white 2	2.498
	CRR073311	Second white 3	2.633
	CRR073312	Silver flowering 1	2.262
	CRR073313	Silver flowering 2	2.534
	CRR073314	Silver flowering 3	1.764
	CRR073315	Gold flowering 1	5.192
	CRR073316	Gold flowering 2	6.860
	CRR073317	Gold flowering 3	6.092
	CRR073318	Tawny withering 1	6.448
	CRR073319	Tawny withering 2	5.441
	CRR073320	Tawny withering 3	7.445