Gene detail

Detail information of GWHGAAZE021995

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20692.1	5.7427E-147	unnamed protein product [Coffea canephora]
Swissprot	tr\|O22768\|UNE12_ARATH	2E-77	Transcription factor UNE12
trEMBL	tr\|A0A068VJD0\|A0A068VJD0_COFCA	2E-147	Coffea canephora DH200=94 genomic scaffold, scaffold_1573 {ECO:0000313\|EMBL:CDP20692.1}
TAIR10	AT4G02590.2	4E-57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65384007	65389573	+
GWHAAZE00000006	mRNA	65384007	65389573	+
GWHAAZE00000006	exon	65384007	65384231	+
GWHAAZE00000006	exon	65384794	65384886	+
GWHAAZE00000006	exon	65385983	65386102	+
GWHAAZE00000006	exon	65386250	65386315	+
GWHAAZE00000006	exon	65386910	65386975	+
GWHAAZE00000006	exon	65387652	65387729	+
GWHAAZE00000006	exon	65389340	65389573	+
GWHAAZE00000006	CDS	65384007	65384231	+
GWHAAZE00000006	CDS	65384794	65384886	+
GWHAAZE00000006	CDS	65385983	65386102	+
GWHAAZE00000006	CDS	65386250	65386315	+
GWHAAZE00000006	CDS	65386910	65386975	+
GWHAAZE00000006	CDS	65387652	65387729	+
GWHAAZE00000006	CDS	65389340	65389573	+

Transcript Sequence
>GWHTAAZE022021 ATGGCGAATAATCCGCCGGAGGGCTACGGCGACGATTTCCTCGACCAAATCCTCGCCGTTCCTTCCTTCGCCGGTTTGCCTGTCAACGATGGCGTTTCGCCTGATACGACGTCGTTGGGGGCTCTGCCCCGCCTTGGCCCCGGCGGCGGGATGTTTCCGCTGGGGTTGAGCTTGCATAACGGTCGGGATGCGGTTGATGGTAGTGGTACTTTTACTGGCCAGAGTGAGAGAAGCTCAATGAACATGGCTTCTTTTTTTCCGGTGTTTGAACAAATTCAGCCCCACTCAATTCGCCATACTGGTCCTCAGGTTCACCAGGTTTTTCAAGGCCAACCAACTACAAGTACAGCAGTCACAGTGCCACATCCTCCGTCCATTCGACCAAGGGTACGGGCTCGAAGAGGTCAAGCAACAGATCCCCACAGTATTGCTGAGCGGTTACGCAGGGAAAGGATCGCTGAAAGAATGAGGGCCTTGCAGGATCTTGTTCCCAGCTGCAACAAGACTGATAAGGCTACCATGCTTGATGAAATTCTGGACTATGTTAAGTTTTTAAGGCTTCAAGTCAAGGTTCTGAGCATGAGTAGGCTTGGTGGAGCCGGGGCGGTGGCACAACTCGTAACTGACATCCCACTTCAATCTGTGGAGGGGGACATTGGCGAGAATGGGCGAGGCACGTCGGCCTGGGAGACCTGGTCAAACGACGACACAGAACGTGAGGTAGCCAAGCTCATGGAAGAAGACGTTGGAGCTGCAATGCAGTTCCTCCAATCCAAAGCACTCTGCATCATGCCAATATCACTTGCCGCCCTAATCTACCCCACCACCCACCAACCGGATCCCGCCAACCCTGTCAAGCCTGAACCGCCCGCTCCGTCATAG

Network for GWHGAAZE021995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	141	185	7.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	73.849
	SRR3591706	second leaf	34.976
	SRR3591707	mature leaf	36.055
	SRR3591708	Shoot apex	122.320
	SRR3591709	Stem	134.345
	SRR3591710	White floral bud	36.809
	SRR3591711	White flower	57.776
	SRR3591712	Green floral bud	33.006
	SRR3591713	Yellow flower	59.698
SRP173429	SRR8316895	Juvenile bud stage	33.891
	SRR8316896	Juvenile bud stage	38.810
	SRR8316897	Juvenile bud stage	17.995
	SRR8316894	Third green stage	10.355
	SRR8316900	Third green stage	24.437
	SRR8316901	Third green stage	30.141
	SRR8316898	Complete white stage	3.429
	SRR8316899	Complete white stage	60.903
	SRR8316903	Complete white stage	12.939
	SRR8316902	Silver flowering stage	5.311
	SRR8316904	Silver flowering stage	4.965
	SRR8316905	Silver flowering stage	3.642
	SRR8316906	Gold flowering stage	13.958
	SRR8316907	Gold flowering stage	21.443
	SRR8316908	Gold flowering stage	20.639
SRP132670	SRR6706286	Control	33.883
	SRR6706287	Light intensity 50%	30.089
	SRR6706288	Light intensity 20%	27.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.272
	CNS0095593	Slightly white alabastrum(diploid) 2	41.818
	CNS0095594	Slightly white alabastrum(diploid) 3	38.971
	CNS0095595	Whole white alabastrum(diploid) 2	30.798
	CNS0095596	Whole white alabastrum(diploid) 3	15.694
	CNS0095597	Whole white alabastrum(diploid) 4	20.382
	CNS0095598	Silvery flower (diploied) 1	73.127
	CNS0095599	Silvery flower (diploied) 2	70.498
	CNS0095600	Silvery flower (diploied) 3	34.820
	CNS0095601	Golden flower (diploid) 1	74.613
	CNS0095602	Golden flower (diploid) 2	66.516
	CNS0095603	Golden flower (diploid) 3	69.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.848
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.715
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.876
	CNS0095610	Silvery flower (tetraploid) 1	26.055
	CNS0095611	Silvery flower (tetraploid) 2	38.265
	CNS0095612	Silvery flower (tetraploid) 3	13.192
	CNS0095613	Golden flower (tetraploid) 1	22.666
	CNS0095614	Golden flower (tetraploid) 2	34.848
	CNS0095615	Golden flower (tetraploid) 3	31.069
CRA001975	CRR073297	Stem 1	77.397
	CRR073298	Stem 2	64.936
	CRR073299	Stem 3	95.710
	CRR073300	Leaf 1	46.568
	CRR073301	Leaf 2	47.980
	CRR073302	Leaf 3	44.139
	CRR073303	Juvenile bud 1	40.110
	CRR073304	Juvenile bud 2	20.664
	CRR073305	Juvenile bud 3	85.465
	CRR073306	Third green 1	3.095
	CRR073307	Third green 2	3.249
	CRR073308	Third green 3	4.789
	CRR073309	Second white 1	7.322
	CRR073310	Second white 2	6.562
	CRR073311	Second white 3	5.583
	CRR073312	Silver flowering 1	15.494
	CRR073313	Silver flowering 2	27.146
	CRR073314	Silver flowering 3	31.472
	CRR073315	Gold flowering 1	85.919
	CRR073316	Gold flowering 2	126.045
	CRR073317	Gold flowering 3	88.051
	CRR073318	Tawny withering 1	194.895
	CRR073319	Tawny withering 2	187.313
	CRR073320	Tawny withering 3	174.998