Detail information of GWHGAAZE021994


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI26350.30unnamed protein product [Vitis vinifera]
COGYP_003372407.11E-19serine/threonine protein kinase
Swissprottr|O22808|LYK5_ARATH2E-62Protein LYK5 (Precursor)
trEMBLtr|B9RTG0|B9RTG0_RICCO0Serine-threonine protein kinase, plant-type, putative {ECO:0000313|EMBL:EEF45192.1}
TAIR10AT2G33580.15E-57Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6537545065379084+
GWHAAZE00000006mRNA6537545065379084+
GWHAAZE00000006exon6537545065375940+
GWHAAZE00000006exon6537629265376592+
GWHAAZE00000006exon6537835065379084+
GWHAAZE00000006CDS6537545065375940+
GWHAAZE00000006CDS6537629265376592+
GWHAAZE00000006CDS6537835065379084+
Transcript Sequence

Network for GWHGAAZE021994

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase2344821.80E-41
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LysM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE021994.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.094
SRR3591706second leaf4.899
SRR3591707mature leaf4.452
SRR3591708Shoot apex15.644
SRR3591709Stem25.679
SRR3591710White floral bud26.266
SRR3591711White flower38.907
SRR3591712Green floral bud20.966
SRR3591713Yellow flower35.351
SRP173429 SRR8316895Juvenile bud stage 4.658
SRR8316896Juvenile bud stage 5.240
SRR8316897Juvenile bud stage 6.214
SRR8316894Third green stage 2.409
SRR8316900Third green stage 4.204
SRR8316901Third green stage 5.082
SRR8316898Complete white stage 4.480
SRR8316899Complete white stage 10.527
SRR8316903Complete white stage 7.545
SRR8316902Silver flowering stage7.836
SRR8316904Silver flowering stage9.574
SRR8316905Silver flowering stage5.605
SRR8316906Gold flowering stage 22.630
SRR8316907Gold flowering stage 19.260
SRR8316908Gold flowering stage 33.898
SRP132670SRR6706286Control11.996
SRR6706287Light intensity 50%10.366
SRR6706288Light intensity 20%9.547
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.897
CNS0095593Slightly white alabastrum(diploid) 26.531
CNS0095594Slightly white alabastrum(diploid) 38.335
CNS0095595Whole white alabastrum(diploid) 26.051
CNS0095596Whole white alabastrum(diploid) 34.592
CNS0095597Whole white alabastrum(diploid) 45.055
CNS0095598Silvery flower (diploied) 111.902
CNS0095599Silvery flower (diploied) 211.442
CNS0095600Silvery flower (diploied) 316.836
CNS0095601Golden flower (diploid) 112.915
CNS0095602Golden flower (diploid) 219.544
CNS0095603Golden flower (diploid) 319.284
CNS0095604Slightly white alabastrum(tetraploid) 112.768
CNS0095605Slightly white alabastrum(tetraploid) 210.888
CNS0095606Slightly white alabastrum(tetraploid) 322.599
CNS0095607Whole white alabastrum(tetraploid) 17.831
CNS0095608Whole white alabastrum(tetraploid) 26.384
CNS0095609Whole white alabastrum(tetraploid) 313.230
CNS0095610Silvery flower (tetraploid) 139.318
CNS0095611Silvery flower (tetraploid) 235.794
CNS0095612Silvery flower (tetraploid) 324.791
CNS0095613Golden flower (tetraploid) 122.187
CNS0095614Golden flower (tetraploid) 235.411
CNS0095615Golden flower (tetraploid) 327.272
CRA001975CRR073297Stem 111.070
CRR073298Stem 29.742
CRR073299Stem 310.969
CRR073300Leaf 110.622
CRR073301Leaf 212.280
CRR073302Leaf 37.219
CRR073303Juvenile bud 17.951
CRR073304Juvenile bud 27.893
CRR073305Juvenile bud 316.136
CRR073306Third green 117.960
CRR073307Third green 218.862
CRR073308Third green 318.671
CRR073309Second white 115.884
CRR073310Second white 214.974
CRR073311Second white 311.230
CRR073312Silver flowering 117.170
CRR073313Silver flowering 219.415
CRR073314Silver flowering 317.614
CRR073315Gold flowering 16.086
CRR073316Gold flowering 27.727
CRR073317Gold flowering 35.887
CRR073318Tawny withering 118.353
CRR073319Tawny withering 216.182
CRR073320Tawny withering 310.442