Detail information of GWHGAAZE021981


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010102294.10GDP-mannose 3,5-epimerase 1 [Morus notabilis]
COGYP_589972.18E-125NAD-dependent epimerase/dehydratase
Swissprottr|A2Z7B3|GME1_ORYSI0GDP-mannose 3,5-epimerase 1
trEMBLtr|W9RI64|W9RI64_9ROSA0GDP-mannose 3,5-epimerase 1 {ECO:0000313|EMBL:EXB93237.1}
TAIR10AT5G28840.20GDP-D-mannose 3',5'-epimerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6514285865144955-
GWHAAZE00000006mRNA6514285865144955-
GWHAAZE00000006exon6514285865143013-
GWHAAZE00000006exon6514312165143328-
GWHAAZE00000006exon6514351365143645-
GWHAAZE00000006exon6514374965143878-
GWHAAZE00000006exon6514401065144103-
GWHAAZE00000006exon6514455565144955-
GWHAAZE00000006CDS6514455565144955-
GWHAAZE00000006CDS6514401065144103-
GWHAAZE00000006CDS6514374965143878-
GWHAAZE00000006CDS6514351365143645-
GWHAAZE00000006CDS6514312165143328-
GWHAAZE00000006CDS6514285865143013-
Transcript Sequence

Network for GWHGAAZE021981

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01370.22Epimerase272668.20E-47
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10046GME Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0051287molecular_functionNAD binding
GO:0003824molecular_functioncatalytic activity
GO:0050662molecular_functioncoenzyme binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.706
SRR3591706second leaf96.683
SRR3591707mature leaf47.998
SRR3591708Shoot apex45.747
SRR3591709Stem13.443
SRR3591710White floral bud45.160
SRR3591711White flower15.470
SRR3591712Green floral bud555.639
SRR3591713Yellow flower9.692
SRP173429 SRR8316895Juvenile bud stage 184.875
SRR8316896Juvenile bud stage 491.112
SRR8316897Juvenile bud stage 246.318
SRR8316894Third green stage 119.429
SRR8316900Third green stage 302.380
SRR8316901Third green stage 295.594
SRR8316898Complete white stage 15.468
SRR8316899Complete white stage 84.722
SRR8316903Complete white stage 16.993
SRR8316902Silver flowering stage1.039
SRR8316904Silver flowering stage2.009
SRR8316905Silver flowering stage0.684
SRR8316906Gold flowering stage 1.063
SRR8316907Gold flowering stage 3.963
SRR8316908Gold flowering stage 1.655
SRP132670SRR6706286Control343.075
SRR6706287Light intensity 50%373.939
SRR6706288Light intensity 20%395.579
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1223.553
CNS0095593Slightly white alabastrum(diploid) 2181.966
CNS0095594Slightly white alabastrum(diploid) 3468.742
CNS0095595Whole white alabastrum(diploid) 2179.617
CNS0095596Whole white alabastrum(diploid) 3261.772
CNS0095597Whole white alabastrum(diploid) 4361.087
CNS0095598Silvery flower (diploied) 137.122
CNS0095599Silvery flower (diploied) 277.657
CNS0095600Silvery flower (diploied) 329.338
CNS0095601Golden flower (diploid) 154.658
CNS0095602Golden flower (diploid) 236.294
CNS0095603Golden flower (diploid) 338.924
CNS0095604Slightly white alabastrum(tetraploid) 1322.863
CNS0095605Slightly white alabastrum(tetraploid) 2380.026
CNS0095606Slightly white alabastrum(tetraploid) 3216.102
CNS0095607Whole white alabastrum(tetraploid) 1570.578
CNS0095608Whole white alabastrum(tetraploid) 2471.635
CNS0095609Whole white alabastrum(tetraploid) 3667.102
CNS0095610Silvery flower (tetraploid) 111.283
CNS0095611Silvery flower (tetraploid) 225.296
CNS0095612Silvery flower (tetraploid) 316.493
CNS0095613Golden flower (tetraploid) 13.588
CNS0095614Golden flower (tetraploid) 25.691
CNS0095615Golden flower (tetraploid) 35.120
CRA001975CRR073297Stem 1519.754
CRR073298Stem 2616.435
CRR073299Stem 31076.005
CRR073300Leaf 1360.719
CRR073301Leaf 2369.868
CRR073302Leaf 3573.298
CRR073303Juvenile bud 1278.688
CRR073304Juvenile bud 2138.958
CRR073305Juvenile bud 3451.185
CRR073306Third green 116.824
CRR073307Third green 232.093
CRR073308Third green 320.441
CRR073309Second white 14.051
CRR073310Second white 21.963
CRR073311Second white 32.078
CRR073312Silver flowering 14.979
CRR073313Silver flowering 26.923
CRR073314Silver flowering 34.242
CRR073315Gold flowering 137.013
CRR073316Gold flowering 242.761
CRR073317Gold flowering 345.850
CRR073318Tawny withering 1194.798
CRR073319Tawny withering 251.455
CRR073320Tawny withering 3315.072