Detail information of GWHGAAZE021956


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010107719.10Meiotic recombination protein DMC1-like protein [Morus notabilis]
COGNP_579655.18E-87DNA repair and recombination protein RadA
Swissprottr|Q96449|DMC1_SOYBN0Meiotic recombination protein DMC1 homolog
trEMBLtr|W9RXM4|W9RXM4_9ROSA0Meiotic recombination protein DMC1-like protein {ECO:0000313|EMBL:EXC16754.1}
TAIR10AT3G22880.11E-166DNA repair (Rad51) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6463168164634870-
GWHAAZE00000006mRNA6463168164634870-
GWHAAZE00000006exon6463168164631865-
GWHAAZE00000006exon6463196364632041-
GWHAAZE00000006exon6463213364632201-
GWHAAZE00000006exon6463228664632378-
GWHAAZE00000006exon6463247564632541-
GWHAAZE00000006exon6463269264632753-
GWHAAZE00000006exon6463305564633100-
GWHAAZE00000006exon6463326364633308-
GWHAAZE00000006exon6463341764633474-
GWHAAZE00000006exon6463369864633736-
GWHAAZE00000006exon6463385064633921-
GWHAAZE00000006exon6463400364634094-
GWHAAZE00000006exon6463467264634748-
GWHAAZE00000006exon6463485764634870-
GWHAAZE00000006CDS6463485764634870-
GWHAAZE00000006CDS6463467264634748-
GWHAAZE00000006CDS6463400364634094-
GWHAAZE00000006CDS6463385064633921-
GWHAAZE00000006CDS6463369864633736-
GWHAAZE00000006CDS6463341764633474-
GWHAAZE00000006CDS6463326364633308-
GWHAAZE00000006CDS6463305564633100-
GWHAAZE00000006CDS6463269264632753-
GWHAAZE00000006CDS6463247564632541-
GWHAAZE00000006CDS6463228664632378-
GWHAAZE00000006CDS6463213364632201-
GWHAAZE00000006CDS6463196364632041-
GWHAAZE00000006CDS6463168164631865-
Transcript Sequence

Network for GWHGAAZE021956

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08423.12Rad51883288.10E-111
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10872DMC1 Meiosis - yeast map04113

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0007131biological_processreciprocal meiotic recombination
GO:0006259biological_processDNA metabolic process
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0000150molecular_functionrecombinase activity
GO:0000166molecular_functionnucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.405
SRR3591706second leaf3.319
SRR3591707mature leaf1.209
SRR3591708Shoot apex36.551
SRR3591709Stem5.781
SRR3591710White floral bud2.045
SRR3591711White flower0.878
SRR3591712Green floral bud1.893
SRR3591713Yellow flower0.454
SRP173429 SRR8316895Juvenile bud stage 1.986
SRR8316896Juvenile bud stage 2.999
SRR8316897Juvenile bud stage 0.951
SRR8316894Third green stage 1.749
SRR8316900Third green stage 2.508
SRR8316901Third green stage 2.488
SRR8316898Complete white stage 0.374
SRR8316899Complete white stage 2.272
SRR8316903Complete white stage 2.022
SRR8316902Silver flowering stage0.191
SRR8316904Silver flowering stage0.278
SRR8316905Silver flowering stage0.070
SRR8316906Gold flowering stage 0.151
SRR8316907Gold flowering stage 0.957
SRR8316908Gold flowering stage 0.472
SRP132670SRR6706286Control2.121
SRR6706287Light intensity 50%2.300
SRR6706288Light intensity 20%2.571
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.524
CNS0095593Slightly white alabastrum(diploid) 22.141
CNS0095594Slightly white alabastrum(diploid) 32.062
CNS0095595Whole white alabastrum(diploid) 22.205
CNS0095596Whole white alabastrum(diploid) 32.203
CNS0095597Whole white alabastrum(diploid) 41.064
CNS0095598Silvery flower (diploied) 11.130
CNS0095599Silvery flower (diploied) 21.213
CNS0095600Silvery flower (diploied) 31.583
CNS0095601Golden flower (diploid) 11.584
CNS0095602Golden flower (diploid) 21.218
CNS0095603Golden flower (diploid) 31.294
CNS0095604Slightly white alabastrum(tetraploid) 12.097
CNS0095605Slightly white alabastrum(tetraploid) 21.845
CNS0095606Slightly white alabastrum(tetraploid) 33.439
CNS0095607Whole white alabastrum(tetraploid) 11.328
CNS0095608Whole white alabastrum(tetraploid) 20.441
CNS0095609Whole white alabastrum(tetraploid) 30.353
CNS0095610Silvery flower (tetraploid) 10.147
CNS0095611Silvery flower (tetraploid) 20.595
CNS0095612Silvery flower (tetraploid) 30.211
CNS0095613Golden flower (tetraploid) 10.095
CNS0095614Golden flower (tetraploid) 20.351
CNS0095615Golden flower (tetraploid) 30.057
CRA001975CRR073297Stem 12.939
CRR073298Stem 24.052
CRR073299Stem 35.339
CRR073300Leaf 13.048
CRR073301Leaf 22.914
CRR073302Leaf 32.787
CRR073303Juvenile bud 11.761
CRR073304Juvenile bud 21.032
CRR073305Juvenile bud 32.384
CRR073306Third green 11.155
CRR073307Third green 20.596
CRR073308Third green 30.537
CRR073309Second white 10.405
CRR073310Second white 20.509
CRR073311Second white 30.343
CRR073312Silver flowering 10.084
CRR073313Silver flowering 20.746
CRR073314Silver flowering 30.274
CRR073315Gold flowering 10.005
CRR073316Gold flowering 20.429
CRR073317Gold flowering 30.000
CRR073318Tawny withering 14.211
CRR073319Tawny withering 23.480
CRR073320Tawny withering 35.681