Gene detail

Detail information of GWHGAAZE021949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009587300.1	7.9349E-125	PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255\|HAMAP-Rule:MF_03154} [Nicotiana tomentosiformis]
COG	YP_003268639.1	2E-19	acireductone dioxygenase
Swissprot	tr\|F6HDT7\|MTND2_VITVI	5E-127	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 {ECO:0000255\|HAMAP-Rule:MF_03154}
trEMBL	tr\|V4RZF3\|V4RZF3_9ROSI	6E-125	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256\|HAMAP-Rule:MF_03154}
TAIR10	AT4G14710.2	3E-94	RmlC-like cupins superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64571408	64574451	+
GWHAAZE00000006	mRNA	64571408	64574451	+
GWHAAZE00000006	exon	64571408	64571425	+
GWHAAZE00000006	exon	64572375	64572504	+
GWHAAZE00000006	exon	64572592	64572686	+
GWHAAZE00000006	exon	64573179	64573293	+
GWHAAZE00000006	exon	64573382	64573506	+
GWHAAZE00000006	exon	64574217	64574287	+
GWHAAZE00000006	exon	64574385	64574451	+
GWHAAZE00000006	CDS	64571408	64571425	+
GWHAAZE00000006	CDS	64572375	64572504	+
GWHAAZE00000006	CDS	64572592	64572686	+
GWHAAZE00000006	CDS	64573179	64573293	+
GWHAAZE00000006	CDS	64573382	64573506	+
GWHAAZE00000006	CDS	64574217	64574287	+
GWHAAZE00000006	CDS	64574385	64574451	+

Transcript Sequence
>GWHTAAZE021975 ATGGCGTCTTTAAGCAAGTTTTTTGGCTTTGTGCAGGATGAGAGGGAGGAAGTCATACAGGCATGGTACATGGATGATAGTGATGAAGACCAAAGACTCCTCCATCACCGGGATCCGCCAGAATTTGTGTCCCTCGACAAACTTGCTGAACTTGGAGTGCTTAGCTGGCGATTAGATGCTGATAAATATGAAACAGATGAGGAGTTGAAGAAAATTCGTGAAGACCGTGGATATTCCTACATGGACATGATTGAGGTTTGCCCAGAAAAGTTGCCTAACTATGAACAGAAGATCAAAAACTTTTTTGAAGAACATCTTCACACTGACGAGGAGATCCGCTACTGTGTTGGTGGAAGTGGTTATTTTGATGTGAGGGATCAAAATGATGCTTGGATCCGCGTATGGGTAAAGAAAGGGGGCATGATAGTACTACCTGCTGGAATTTATCACCGATTTACACTTGATACGGACAATTACATTAAGGCAATGCGGCTGTTTGTTGGGGATCCAATTTGGACTCCATTTAACCGTCCACATGATCACCTACCTGCACGAAAAGAGTATATCGAAGCCTTTGTGGAGAAGGGGGCTGCCAACAAGCCTGTTAATGCTGCAGCTTAA

Network for GWHGAAZE021949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03079.15	ARD	20	174	5.20E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08967	mtnD, mtnZ, ADI1	Metabolic pathways	map01100
K08967	mtnD, mtnZ, ADI1	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0019509	biological_process	L-methionine salvage from methylthioadenosine
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0010309	molecular_function	acireductone dioxygenase [iron(II)-requiring] activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.928
	SRR3591706	second leaf	55.968
	SRR3591707	mature leaf	79.637
	SRR3591708	Shoot apex	43.062
	SRR3591709	Stem	122.145
	SRR3591710	White floral bud	76.042
	SRR3591711	White flower	178.060
	SRR3591712	Green floral bud	60.217
	SRR3591713	Yellow flower	206.397
SRP173429	SRR8316895	Juvenile bud stage	53.462
	SRR8316896	Juvenile bud stage	71.803
	SRR8316897	Juvenile bud stage	24.681
	SRR8316894	Third green stage	20.403
	SRR8316900	Third green stage	52.551
	SRR8316901	Third green stage	56.963
	SRR8316898	Complete white stage	23.687
	SRR8316899	Complete white stage	72.124
	SRR8316903	Complete white stage	36.767
	SRR8316902	Silver flowering stage	46.200
	SRR8316904	Silver flowering stage	63.831
	SRR8316905	Silver flowering stage	35.656
	SRR8316906	Gold flowering stage	113.406
	SRR8316907	Gold flowering stage	112.744
	SRR8316908	Gold flowering stage	106.630
SRP132670	SRR6706286	Control	60.645
	SRR6706287	Light intensity 50%	46.238
	SRR6706288	Light intensity 20%	46.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.246
	CNS0095593	Slightly white alabastrum(diploid) 2	64.467
	CNS0095594	Slightly white alabastrum(diploid) 3	64.173
	CNS0095595	Whole white alabastrum(diploid) 2	53.962
	CNS0095596	Whole white alabastrum(diploid) 3	50.460
	CNS0095597	Whole white alabastrum(diploid) 4	48.464
	CNS0095598	Silvery flower (diploied) 1	69.449
	CNS0095599	Silvery flower (diploied) 2	85.084
	CNS0095600	Silvery flower (diploied) 3	95.505
	CNS0095601	Golden flower (diploid) 1	72.878
	CNS0095602	Golden flower (diploid) 2	97.967
	CNS0095603	Golden flower (diploid) 3	98.918
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	71.589
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.156
	CNS0095607	Whole white alabastrum(tetraploid) 1	60.616
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.959
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.704
	CNS0095610	Silvery flower (tetraploid) 1	181.837
	CNS0095611	Silvery flower (tetraploid) 2	183.143
	CNS0095612	Silvery flower (tetraploid) 3	235.979
	CNS0095613	Golden flower (tetraploid) 1	149.850
	CNS0095614	Golden flower (tetraploid) 2	140.353
	CNS0095615	Golden flower (tetraploid) 3	112.748
CRA001975	CRR073297	Stem 1	49.084
	CRR073298	Stem 2	46.804
	CRR073299	Stem 3	67.380
	CRR073300	Leaf 1	23.481
	CRR073301	Leaf 2	25.570
	CRR073302	Leaf 3	24.218
	CRR073303	Juvenile bud 1	24.833
	CRR073304	Juvenile bud 2	15.126
	CRR073305	Juvenile bud 3	23.078
	CRR073306	Third green 1	20.550
	CRR073307	Third green 2	19.319
	CRR073308	Third green 3	19.512
	CRR073309	Second white 1	47.689
	CRR073310	Second white 2	52.042
	CRR073311	Second white 3	42.774
	CRR073312	Silver flowering 1	37.717
	CRR073313	Silver flowering 2	38.114
	CRR073314	Silver flowering 3	45.924
	CRR073315	Gold flowering 1	44.510
	CRR073316	Gold flowering 2	41.600
	CRR073317	Gold flowering 3	28.252
	CRR073318	Tawny withering 1	65.809
	CRR073319	Tawny withering 2	73.448
	CRR073320	Tawny withering 3	53.021