Detail information of GWHGAAZE021948


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010256185.15.21321E-81PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Nelumbo nucifera]
COGYP_003268639.13E-19acireductone dioxygenase
Swissprottr|D7T737|MTND1_VITVI3E-811,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 {ECO:0000255|HAMAP-Rule:MF_03154}
trEMBLtr|A0A067KZ71|A0A067KZ71_JATCU6E-791,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase {ECO:0000256|HAMAP-Rule:MF_03154}
TAIR10AT5G43850.11E-59RmlC-like cupins superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6455618164558181+
GWHAAZE00000006mRNA6455618164558181+
GWHAAZE00000006exon6455618164556241+
GWHAAZE00000006exon6455634764556441+
GWHAAZE00000006exon6455756564557808+
GWHAAZE00000006exon6455808464558181+
GWHAAZE00000006CDS6455618164556241+
GWHAAZE00000006CDS6455634764556441+
GWHAAZE00000006CDS6455756564557808+
GWHAAZE00000006CDS6455808464558181+
Transcript Sequence

Network for GWHGAAZE021948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03079.15ARD11341.60E-47
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08967mtnD, mtnZ, ADI1 Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0019509biological_processL-methionine salvage from methylthioadenosine
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity
GO:0010309molecular_functionacireductone dioxygenase [iron(II)-requiring] activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.966
SRR3591706second leaf88.729
SRR3591707mature leaf303.797
SRR3591708Shoot apex18.329
SRR3591709Stem1.814
SRR3591710White floral bud10.645
SRR3591711White flower14.734
SRR3591712Green floral bud9.658
SRR3591713Yellow flower7.840
SRP173429 SRR8316895Juvenile bud stage 17.932
SRR8316896Juvenile bud stage 31.127
SRR8316897Juvenile bud stage 11.071
SRR8316894Third green stage 9.108
SRR8316900Third green stage 26.301
SRR8316901Third green stage 22.275
SRR8316898Complete white stage 10.643
SRR8316899Complete white stage 41.283
SRR8316903Complete white stage 14.435
SRR8316902Silver flowering stage8.928
SRR8316904Silver flowering stage6.007
SRR8316905Silver flowering stage3.608
SRR8316906Gold flowering stage 6.959
SRR8316907Gold flowering stage 8.170
SRR8316908Gold flowering stage 5.368
SRP132670SRR6706286Control53.382
SRR6706287Light intensity 50%49.915
SRR6706288Light intensity 20%58.246
CNP0000432CNS0095592Slightly white alabastrum(diploid) 135.501
CNS0095593Slightly white alabastrum(diploid) 228.713
CNS0095594Slightly white alabastrum(diploid) 343.521
CNS0095595Whole white alabastrum(diploid) 234.322
CNS0095596Whole white alabastrum(diploid) 342.674
CNS0095597Whole white alabastrum(diploid) 439.081
CNS0095598Silvery flower (diploied) 147.497
CNS0095599Silvery flower (diploied) 265.505
CNS0095600Silvery flower (diploied) 330.578
CNS0095601Golden flower (diploid) 174.983
CNS0095602Golden flower (diploid) 238.777
CNS0095603Golden flower (diploid) 339.845
CNS0095604Slightly white alabastrum(tetraploid) 140.196
CNS0095605Slightly white alabastrum(tetraploid) 233.906
CNS0095606Slightly white alabastrum(tetraploid) 328.375
CNS0095607Whole white alabastrum(tetraploid) 136.509
CNS0095608Whole white alabastrum(tetraploid) 232.852
CNS0095609Whole white alabastrum(tetraploid) 344.765
CNS0095610Silvery flower (tetraploid) 120.582
CNS0095611Silvery flower (tetraploid) 231.882
CNS0095612Silvery flower (tetraploid) 38.186
CNS0095613Golden flower (tetraploid) 16.926
CNS0095614Golden flower (tetraploid) 229.001
CNS0095615Golden flower (tetraploid) 34.855
CRA001975CRR073297Stem 16.544
CRR073298Stem 28.057
CRR073299Stem 37.877
CRR073300Leaf 14.668
CRR073301Leaf 25.137
CRR073302Leaf 37.799
CRR073303Juvenile bud 15.912
CRR073304Juvenile bud 24.018
CRR073305Juvenile bud 33.905
CRR073306Third green 111.434
CRR073307Third green 28.166
CRR073308Third green 312.518
CRR073309Second white 17.338
CRR073310Second white 29.351
CRR073311Second white 33.193
CRR073312Silver flowering 10.837
CRR073313Silver flowering 21.067
CRR073314Silver flowering 32.234
CRR073315Gold flowering 164.372
CRR073316Gold flowering 255.468
CRR073317Gold flowering 339.262
CRR073318Tawny withering 15.096
CRR073319Tawny withering 211.728
CRR073320Tawny withering 33.609