Gene detail

Detail information of GWHGAAZE021930

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011091383.1	PREDICTED: chaperonin CPN60-2, mitochondrial [Sesamum indicum]
COG	YP_006371119.1	protein GroL
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|A0A059B1M2\|A0A059B1M2_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW60142.1}
TAIR10	AT3G23990.1	heat shock protein 60

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64242135	64247283	+
GWHAAZE00000006	mRNA	64242135	64247283	+
GWHAAZE00000006	exon	64242135	64242172	+
GWHAAZE00000006	exon	64242329	64242353	+
GWHAAZE00000006	exon	64242553	64242684	+
GWHAAZE00000006	exon	64243262	64243421	+
GWHAAZE00000006	exon	64243788	64243963	+
GWHAAZE00000006	exon	64244055	64244150	+
GWHAAZE00000006	exon	64244256	64244360	+
GWHAAZE00000006	exon	64244516	64244602	+
GWHAAZE00000006	exon	64244710	64244799	+
GWHAAZE00000006	exon	64244895	64244975	+
GWHAAZE00000006	exon	64245061	64245129	+
GWHAAZE00000006	exon	64245349	64245426	+
GWHAAZE00000006	exon	64245519	64245614	+
GWHAAZE00000006	exon	64245731	64245830	+
GWHAAZE00000006	exon	64245915	64246018	+
GWHAAZE00000006	exon	64246176	64246281	+
GWHAAZE00000006	exon	64246744	64246822	+
GWHAAZE00000006	exon	64247178	64247283	+
GWHAAZE00000006	CDS	64242135	64242172	+
GWHAAZE00000006	CDS	64242329	64242353	+
GWHAAZE00000006	CDS	64242553	64242684	+
GWHAAZE00000006	CDS	64243262	64243421	+
GWHAAZE00000006	CDS	64243788	64243963	+
GWHAAZE00000006	CDS	64244055	64244150	+
GWHAAZE00000006	CDS	64244256	64244360	+
GWHAAZE00000006	CDS	64244516	64244602	+
GWHAAZE00000006	CDS	64244710	64244799	+
GWHAAZE00000006	CDS	64244895	64244975	+
GWHAAZE00000006	CDS	64245061	64245129	+
GWHAAZE00000006	CDS	64245349	64245426	+
GWHAAZE00000006	CDS	64245519	64245614	+
GWHAAZE00000006	CDS	64245731	64245830	+
GWHAAZE00000006	CDS	64245915	64246018	+
GWHAAZE00000006	CDS	64246176	64246281	+
GWHAAZE00000006	CDS	64246744	64246822	+
GWHAAZE00000006	CDS	64247178	64247283	+

Transcript Sequence
>GWHTAAZE021956 ATGTACCGTTTTGCTGCAAACCTTGCCTCTAGATCTTTGGCCGCTCGATACAGCAGTCGACAGATTACTAGTAGGTTGAATTGGAGCAGAAATTATGCTGCCAAAGACATCAAATTCGGAGTTGACGCCCGGGGCTTAATGCTTAGGGGTGTTGAGGAGCTTGCTGATGCGGTTAGAGTGACTATGGGCCCTAAGGGGCGTAATGTGGTGATTGAACAAAGTTTTGGGGCTCCGAAAGTAACGAAAGATGGGGTGACTGTTGCAAAGAGCATCGAATTTAAGGACAAAATCAAAAATATTGGTGCAAGCCTTGTAAAACAGGTTGCAAATGCTACAAATGATGTTGCTGGTGATGGGACTACTTGTGCAACAGTCCTCACCCGTGCTATATTTACCGAAGGATGCAAGTCAGTTGCAGCTGGTATGAATGCAATGGACCTTAGACGTGGTATAAGTATGGCCGTTGATGCTGTGGTAGCAAACTTGAAGAGCAGAGCTCGGATGATAAGCACATCGGAAGAAATAGCACAGGTTGGGACGATATCAGCAAATGGGGACAGAGAAATTGGTGAGCTGATTGCTAAGGCTATGGAGAAAGTTGGAAAAGAGGGAGTTATTACAATTCAAGATGGTAAGACATTGTTTAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGACAGAGGCTACATATCCCCTTATTTCATCACGAACCAGAAGAACCAGAAATGTGAATTAGAGGACCCCCTCATTCTAATCCATGAGAAGAAGATCTCGAGTATAAATGCTGTGGTGAAAGTTCTAGAGTTGGCGTTGAAGAGACAAAGGCCTCTGTTGATTGTTGCTGAAGATGTGGAAAGTGATGCACTTGCGACGCTTATACTTAACAAGCTTCGTGGTGGAATCAAGGTTTGTGCCATAAAAGCTCCAGGATTTGGGGAGAACAGGAAGGCCAACATGCAGGATCTCGCCACTCTCACTGGAGGGGATGTTATTACTGAAGAACTTGGTTTGAATCTTGAAAATGTGGAGCTGGAAATGCTTGGCTCATGTAAAAAGGTCACAATATCTAAGGATGACACAGTTGTTCTTGACGGTGCTGGTGAGAAAAAGGCCATAGAGGAAAGATGTGAACAGATTAGGTCGGCAATTGAATTGAGTACTTCTGATTATGACAAGGAGAAGTTGCAAGAGAGGTTAGCAAAGCTTTCTGGCGGCGTTGCTGTATTGAAGATTGGAGGGGCTAGTGAAACAGAAGTTGGTGAGAAGAAAGACAGAGTAACAGATGCCCTAAATGCCACAAAGGCAGCAGTAGAGGAAGGGATCGTTCCTGGTGGTGGCATTGCTCTTTTATATGCATCAAAAGAGTTGGACAAATTACCAACTGCTAACTTTGATCAGAAGATTGGTGTTCAGATAATTCAAAATGCACTAAAGACACCAGTGCATACGATTGCCTCAAATGCTGGTGTTGAGGGTGCCGTTGTTGTTGGCAAGCTGTTGGAGCTGGATAACCCCGATCTAGGCTATGACGCAGCTAAAGGTGAATATGTAGATATGGTCAAAAGCGGAATCATTGATCCATTGAAAGTGATAAGAACAGCCTTGGTTGATGCAGCAAGTGTATCTTCTTTGATGACAACCACAGAAGCTATTGTGGTTGAGCTTCCAAAGGACAAGATGGAAGCTCCGGCAATGGGTGGCGGCATGGGTGGCATGGATTATTGA

Network for GWHGAAZE021930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	54	555	2.00E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0042026	biological_process	protein refolding
GO:0006457	biological_process	protein folding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.744
	SRR3591706	second leaf	3.444
	SRR3591707	mature leaf	2.831
	SRR3591708	Shoot apex	31.129
	SRR3591709	Stem	6.295
	SRR3591710	White floral bud	5.714
	SRR3591711	White flower	11.078
	SRR3591712	Green floral bud	22.239
	SRR3591713	Yellow flower	4.291
SRP173429	SRR8316895	Juvenile bud stage	35.256
	SRR8316896	Juvenile bud stage	50.427
	SRR8316897	Juvenile bud stage	20.036
	SRR8316894	Third green stage	16.815
	SRR8316900	Third green stage	44.196
	SRR8316901	Third green stage	29.963
	SRR8316898	Complete white stage	0.776
	SRR8316899	Complete white stage	17.806
	SRR8316903	Complete white stage	2.428
	SRR8316902	Silver flowering stage	1.415
	SRR8316904	Silver flowering stage	1.964
	SRR8316905	Silver flowering stage	0.470
	SRR8316906	Gold flowering stage	3.917
	SRR8316907	Gold flowering stage	3.479
	SRR8316908	Gold flowering stage	3.391
SRP132670	SRR6706286	Control	36.254
	SRR6706287	Light intensity 50%	36.171
	SRR6706288	Light intensity 20%	38.935
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.758
	CNS0095593	Slightly white alabastrum(diploid) 2	33.612
	CNS0095594	Slightly white alabastrum(diploid) 3	28.607
	CNS0095595	Whole white alabastrum(diploid) 2	21.082
	CNS0095596	Whole white alabastrum(diploid) 3	25.855
	CNS0095597	Whole white alabastrum(diploid) 4	18.033
	CNS0095598	Silvery flower (diploied) 1	13.712
	CNS0095599	Silvery flower (diploied) 2	14.178
	CNS0095600	Silvery flower (diploied) 3	8.960
	CNS0095601	Golden flower (diploid) 1	16.080
	CNS0095602	Golden flower (diploid) 2	6.681
	CNS0095603	Golden flower (diploid) 3	8.059
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.802
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.735
	CNS0095610	Silvery flower (tetraploid) 1	11.134
	CNS0095611	Silvery flower (tetraploid) 2	8.580
	CNS0095612	Silvery flower (tetraploid) 3	4.675
	CNS0095613	Golden flower (tetraploid) 1	2.225
	CNS0095614	Golden flower (tetraploid) 2	5.183
	CNS0095615	Golden flower (tetraploid) 3	0.369
CRA001975	CRR073297	Stem 1	36.127
	CRR073298	Stem 2	31.285
	CRR073299	Stem 3	27.355
	CRR073300	Leaf 1	23.869
	CRR073301	Leaf 2	27.001
	CRR073302	Leaf 3	26.147
	CRR073303	Juvenile bud 1	24.446
	CRR073304	Juvenile bud 2	8.677
	CRR073305	Juvenile bud 3	22.685
	CRR073306	Third green 1	0.253
	CRR073307	Third green 2	0.221
	CRR073308	Third green 3	0.676
	CRR073309	Second white 1	0.192
	CRR073310	Second white 2	1.080
	CRR073311	Second white 3	0.446
	CRR073312	Silver flowering 1	0.126
	CRR073313	Silver flowering 2	0.519
	CRR073314	Silver flowering 3	0.419
	CRR073315	Gold flowering 1	5.807
	CRR073316	Gold flowering 2	10.383
	CRR073317	Gold flowering 3	4.552
	CRR073318	Tawny withering 1	12.183
	CRR073319	Tawny withering 2	12.860
	CRR073320	Tawny withering 3	13.541