Gene detail

Detail information of GWHGAAZE021891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035137.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein isoform 1 [Theobroma cacao]
COG	YP_643722.1	6E-21	serine/threonine protein kinase
Swissprot	tr\|Q9LE81\|IRE_ARATH	3E-74	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|A0A061EUV4\|A0A061EUV4_THECC	0	AGC (CAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY06064.1}
TAIR10	AT4G14350.3	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	63465545	63473278	-
GWHAAZE00000006	mRNA	63465545	63473278	-
GWHAAZE00000006	exon	63473055	63473278	-
GWHAAZE00000006	exon	63469514	63469583	-
GWHAAZE00000006	exon	63469190	63469431	-
GWHAAZE00000006	exon	63468861	63469080	-
GWHAAZE00000006	exon	63467940	63468019	-
GWHAAZE00000006	exon	63467764	63467848	-
GWHAAZE00000006	exon	63466491	63466622	-
GWHAAZE00000006	exon	63466289	63466402	-
GWHAAZE00000006	exon	63466157	63466204	-
GWHAAZE00000006	exon	63465545	63465664	-
GWHAAZE00000006	CDS	63473055	63473278	-
GWHAAZE00000006	CDS	63469514	63469583	-
GWHAAZE00000006	CDS	63469190	63469431	-
GWHAAZE00000006	CDS	63468861	63469080	-
GWHAAZE00000006	CDS	63467940	63468019	-
GWHAAZE00000006	CDS	63467764	63467848	-
GWHAAZE00000006	CDS	63466491	63466622	-
GWHAAZE00000006	CDS	63466289	63466402	-
GWHAAZE00000006	CDS	63466157	63466204	-
GWHAAZE00000006	CDS	63465545	63465664	-

Transcript Sequence
>GWHTAAZE021917 ATGGAGGTGGCAAAGCGTTGGCTCAGTAAATTGCGATCAAAAGATAAGCCAAAGCCTTCAAAGAAGAAGGAAACGGCGATTAATGGAAAAGAAGGGTCAAAAGCACCACCAACAAATGAAGAAGCACCTTCAAATGCCACTAAGCAGAAGGTTGCAGCAGCCAAGCAGTATATTGAAAAGCATTACAAGGAGCAAATGAAGAACCTGCAGGAGCGGAGGGAGCGAGAGAAGACAACCGGCCATGTGTATGCTATGAAAAAGCTTAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTTGAACATGTCAAAGCGGAAAGGAACCTACTTGCTGAGGTTGACAGTAACTGCATTGTTAAACTTTATTGTTCATTCCAAGATGAAGAGTATCTTTATCTCATAATGGAATATCTACCTGGTGGAGATATGATGACGTTACTAATGCGGAAAGATACCCTAACTGAAGATGAGGCCCGTTTTTATGTTGGGGAAACGGTTCTAGCTATTGAGTCCATCCATAGACATAATTATATTCATAGGGATATCAAGCCTGACAACTTGCTGCTTGATAAATATGGCCATATGAAATTGTCGGATTTCGGATTATGCAAACCATTAGACTGTAGTAATCTTCATGAGAAGGATTTTTCTGGGGGAAACAACCTTAGTGGGGCTCTTCAAAGTGATGGACGCCCTGTAGCCCCAAAGCGCACTCAACAAGAGCAATTGCAGCATTGGCAGAGGAACAGGAGGATGCTTGCTTATTCCACTGTTGGAACACCTGATTATATTGCTCCAGAAGTTTTGCTTAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCTCTCGGTGCAATTATGTATGAGATGCTTGTTGGATATCCACCTTTTTATTCAGATGAACCTATGTCTACTTGTAGGAAGATAGTTAACTGGAGAACTCATTTGAAATTCCCTGAAGAGGCAAAACTATCCCCAGAAGCAAAAGACCTCATCAGTAAACTCTTATGTAACGTTGAGAAGAGGCTTGGAACAAAAGGGGCCGATGAAATAAAGGCTCACCCATGGTTCAAGGGTATTGAATGGGACAACTTGTACCAAAACAAAGCTGCATTTATTCCAGAAGTTAATGATGAGTTGGACACTCAAAATTTTGAGAAGTTTGAGGAGGCTGACAATCAAATATCATCAGCAACAAAGTCAGGTCCTTGGAGAAAGATGCTCCCCTCTAAGGATGTCAACTTTATGGGTTATACGTATAAAAACTTTGAAATTGTAAATGATCATGAGGTTCCTGGAATTGGTATGTTGCTCTTCCATTATTACAAATCATTCTAA

Network for GWHGAAZE021891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	75	356	6.70E-59
PF00433.25	Pkinase_C	375	419	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.001
	SRR3591706	second leaf	42.690
	SRR3591707	mature leaf	27.313
	SRR3591708	Shoot apex	43.216
	SRR3591709	Stem	67.519
	SRR3591710	White floral bud	43.098
	SRR3591711	White flower	41.056
	SRR3591712	Green floral bud	20.291
	SRR3591713	Yellow flower	31.596
SRP173429	SRR8316895	Juvenile bud stage	24.807
	SRR8316896	Juvenile bud stage	31.569
	SRR8316897	Juvenile bud stage	15.541
	SRR8316894	Third green stage	11.231
	SRR8316900	Third green stage	18.217
	SRR8316901	Third green stage	19.683
	SRR8316898	Complete white stage	15.324
	SRR8316899	Complete white stage	38.209
	SRR8316903	Complete white stage	31.145
	SRR8316902	Silver flowering stage	17.026
	SRR8316904	Silver flowering stage	28.274
	SRR8316905	Silver flowering stage	11.246
	SRR8316906	Gold flowering stage	25.157
	SRR8316907	Gold flowering stage	27.068
	SRR8316908	Gold flowering stage	28.029
SRP132670	SRR6706286	Control	12.517
	SRR6706287	Light intensity 50%	15.973
	SRR6706288	Light intensity 20%	13.500
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.374
	CNS0095593	Slightly white alabastrum(diploid) 2	28.191
	CNS0095594	Slightly white alabastrum(diploid) 3	23.824
	CNS0095595	Whole white alabastrum(diploid) 2	20.793
	CNS0095596	Whole white alabastrum(diploid) 3	12.015
	CNS0095597	Whole white alabastrum(diploid) 4	17.858
	CNS0095598	Silvery flower (diploied) 1	37.566
	CNS0095599	Silvery flower (diploied) 2	24.103
	CNS0095600	Silvery flower (diploied) 3	31.576
	CNS0095601	Golden flower (diploid) 1	28.504
	CNS0095602	Golden flower (diploid) 2	32.193
	CNS0095603	Golden flower (diploid) 3	29.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.052
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.175
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.669
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.618
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.640
	CNS0095610	Silvery flower (tetraploid) 1	39.856
	CNS0095611	Silvery flower (tetraploid) 2	37.782
	CNS0095612	Silvery flower (tetraploid) 3	67.425
	CNS0095613	Golden flower (tetraploid) 1	17.641
	CNS0095614	Golden flower (tetraploid) 2	28.816
	CNS0095615	Golden flower (tetraploid) 3	18.416
CRA001975	CRR073297	Stem 1	24.391
	CRR073298	Stem 2	21.776
	CRR073299	Stem 3	19.016
	CRR073300	Leaf 1	18.435
	CRR073301	Leaf 2	18.719
	CRR073302	Leaf 3	13.955
	CRR073303	Juvenile bud 1	9.944
	CRR073304	Juvenile bud 2	12.499
	CRR073305	Juvenile bud 3	18.007
	CRR073306	Third green 1	24.617
	CRR073307	Third green 2	20.843
	CRR073308	Third green 3	26.397
	CRR073309	Second white 1	7.798
	CRR073310	Second white 2	10.335
	CRR073311	Second white 3	8.450
	CRR073312	Silver flowering 1	2.760
	CRR073313	Silver flowering 2	2.120
	CRR073314	Silver flowering 3	3.962
	CRR073315	Gold flowering 1	15.548
	CRR073316	Gold flowering 2	32.354
	CRR073317	Gold flowering 3	16.121
	CRR073318	Tawny withering 1	44.029
	CRR073319	Tawny withering 2	42.741
	CRR073320	Tawny withering 3	44.183