Detail information of GWHGAAZE021890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597949.10PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
COGYP_001275862.15E-17protein kinase
Swissprottr|P42158|KC1D_ARATH0Casein kinase I isoform delta-like
trEMBLtr|K4CW51|K4CW51_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g090250.2.1}
TAIR10AT4G14340.10casein kinase I

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6344201963448523-
GWHAAZE00000006mRNA6344201963448523-
GWHAAZE00000006exon6344844563448523-
GWHAAZE00000006exon6344830963448349-
GWHAAZE00000006exon6344756763447636-
GWHAAZE00000006exon6344730763447455-
GWHAAZE00000006exon6344711763447212-
GWHAAZE00000006exon6344518863445258-
GWHAAZE00000006exon6344491863444979-
GWHAAZE00000006exon6344474063444803-
GWHAAZE00000006exon6344453963444623-
GWHAAZE00000006exon6344362663443752-
GWHAAZE00000006exon6344343363443509-
GWHAAZE00000006exon6344327663443339-
GWHAAZE00000006exon6344277363442888-
GWHAAZE00000006exon6344201963442300-
GWHAAZE00000006CDS6344844563448523-
GWHAAZE00000006CDS6344830963448349-
GWHAAZE00000006CDS6344756763447636-
GWHAAZE00000006CDS6344730763447455-
GWHAAZE00000006CDS6344711763447212-
GWHAAZE00000006CDS6344518863445258-
GWHAAZE00000006CDS6344491863444979-
GWHAAZE00000006CDS6344474063444803-
GWHAAZE00000006CDS6344453963444623-
GWHAAZE00000006CDS6344362663443752-
GWHAAZE00000006CDS6344343363443509-
GWHAAZE00000006CDS6344327663443339-
GWHAAZE00000006CDS6344277363442888-
GWHAAZE00000006CDS6344201963442300-
Transcript Sequence

Network for GWHGAAZE021890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase112285.00E-25
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCK1_CK1

KEGG pathway

KO Enzyme pathway mapID
K08960CSNK1E Wnt signaling pathway map04310
Hedgehog signaling pathwaymap04340
Hedgehog signaling pathway - flymap04341
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Hippo signaling pathway - multiple speciesmap04392
FoxO signaling pathwaymap04068
Circadian rhythmmap04710
Circadian rhythm - flymap04711

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.668
SRR3591706second leaf58.049
SRR3591707mature leaf76.093
SRR3591708Shoot apex43.804
SRR3591709Stem89.511
SRR3591710White floral bud85.718
SRR3591711White flower126.682
SRR3591712Green floral bud54.342
SRR3591713Yellow flower105.563
SRP173429 SRR8316895Juvenile bud stage 38.316
SRR8316896Juvenile bud stage 54.370
SRR8316897Juvenile bud stage 22.203
SRR8316894Third green stage 22.025
SRR8316900Third green stage 56.798
SRR8316901Third green stage 60.088
SRR8316898Complete white stage 59.364
SRR8316899Complete white stage 102.546
SRR8316903Complete white stage 91.288
SRR8316902Silver flowering stage52.161
SRR8316904Silver flowering stage63.876
SRR8316905Silver flowering stage30.365
SRR8316906Gold flowering stage 100.619
SRR8316907Gold flowering stage 99.682
SRR8316908Gold flowering stage 109.574
SRP132670SRR6706286Control30.921
SRR6706287Light intensity 50%35.094
SRR6706288Light intensity 20%36.144
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.711
CNS0095593Slightly white alabastrum(diploid) 253.604
CNS0095594Slightly white alabastrum(diploid) 344.287
CNS0095595Whole white alabastrum(diploid) 244.894
CNS0095596Whole white alabastrum(diploid) 336.394
CNS0095597Whole white alabastrum(diploid) 445.230
CNS0095598Silvery flower (diploied) 187.767
CNS0095599Silvery flower (diploied) 277.534
CNS0095600Silvery flower (diploied) 396.959
CNS0095601Golden flower (diploid) 160.833
CNS0095602Golden flower (diploid) 279.182
CNS0095603Golden flower (diploid) 376.167
CNS0095604Slightly white alabastrum(tetraploid) 142.657
CNS0095605Slightly white alabastrum(tetraploid) 243.563
CNS0095606Slightly white alabastrum(tetraploid) 360.394
CNS0095607Whole white alabastrum(tetraploid) 140.186
CNS0095608Whole white alabastrum(tetraploid) 236.717
CNS0095609Whole white alabastrum(tetraploid) 349.425
CNS0095610Silvery flower (tetraploid) 193.340
CNS0095611Silvery flower (tetraploid) 291.132
CNS0095612Silvery flower (tetraploid) 3116.662
CNS0095613Golden flower (tetraploid) 177.136
CNS0095614Golden flower (tetraploid) 286.258
CNS0095615Golden flower (tetraploid) 386.444
CRA001975CRR073297Stem 135.857
CRR073298Stem 232.553
CRR073299Stem 333.565
CRR073300Leaf 129.144
CRR073301Leaf 235.677
CRR073302Leaf 325.721
CRR073303Juvenile bud 128.506
CRR073304Juvenile bud 238.777
CRR073305Juvenile bud 329.685
CRR073306Third green 145.915
CRR073307Third green 234.893
CRR073308Third green 343.171
CRR073309Second white 147.135
CRR073310Second white 248.873
CRR073311Second white 342.468
CRR073312Silver flowering 140.377
CRR073313Silver flowering 231.051
CRR073314Silver flowering 337.259
CRR073315Gold flowering 124.479
CRR073316Gold flowering 231.216
CRR073317Gold flowering 314.271
CRR073318Tawny withering 149.504
CRR073319Tawny withering 253.433
CRR073320Tawny withering 353.586