Gene detail

Detail information of GWHGAAZE021869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008243905.1	1.3216E-149	PREDICTED: polyubiquitin-A-like isoform X4 [Prunus mume]
COG	YP_004105102.1	2E-14	ubiquitin
Swissprot	tr\|Q9S7X3\|RUB2_ARATH	5E-83	NEDD8-like protein RUB2 (Precursor)
trEMBL	tr\|A0A072UMK2\|A0A072UMK2_MEDTR	1E-149	Polyubiquitin 3 {ECO:0000313\|EMBL:KEH31009.1}
TAIR10	AT4G05320.4	2E-74	polyubiquitin 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	62857662	62874451	+
GWHAAZE00000006	mRNA	62857662	62874451	+
GWHAAZE00000006	exon	62857662	62858225	+
GWHAAZE00000006	exon	62858481	62858780	+
GWHAAZE00000006	exon	62865597	62866163	+
GWHAAZE00000006	exon	62866539	62866718	+
GWHAAZE00000006	exon	62873318	62874451	+
GWHAAZE00000006	CDS	62857662	62858225	+
GWHAAZE00000006	CDS	62858481	62858780	+
GWHAAZE00000006	CDS	62865597	62866163	+
GWHAAZE00000006	CDS	62866539	62866718	+
GWHAAZE00000006	CDS	62873318	62874451	+

Transcript Sequence
>GWHTAAZE021895 ATAAATATATACTTGAAGGTCATCAAAACAGTTGCCTTAAAAGTGAAGAGATCAGAGACTATTAGAAATCTGAAGGCATTGTTATGGGAGAAGGAAGCTGTTTCAGAACATTTTCAGGAGCTTTACTTTTCAGGAGAGCATCTCAATGATGACCAGAAACTAATAGATTGTGTCATACAAAAGAACTGCACTCTCCATATTTTTCTCCAAACTTCAGGGGTAATGAAACTATTTGTTACCATAATCTCAAAGCAAAAGACCATTGAGATCGACGCACAAATTCAAGATACCATTAAAAGCATCAAATCAAAGGTTCAAGCAAAAGAAGGGATTCTCTCACATGGCTTCTCTCTCTTTTATGCTGGAACGTTACTTAAGAATAACAGGACCCTGGCTTCTTTCAACATAAAAGGGGAATCGACCCTTCATTTGATCTTTAATCCAAGAGATGTTTTGTCAGTTTCTGTGAAAATGCCAGATGGCAAGATCGTCAAAATGGAAGCTAAACTCTTGTACACTGTTGGTGATGTCAAAGAGATGGCTGGGAGCATGATTGGTTTCCCACGACTTGAGGATGGTAGAGATTTGGCTAGTTACGGCATCAAGAAGCAATCTACTCTTAATATGGTTCTTCGGCCAACAACATTTTTCCCAGTTAAGTTATCTACAATTGGAGACTTTCAGACAGGTTTACGGAGTTCGACTCCCATTGGTGAGCTGAAGAAGCTGATTGAAAGAAAATGGGGAAATCCAGTAAAGGAAGCTTTCCTTGGTGAACGGCCACTTGAGGATCGATTTTCTCTGGGCCACTATGGAATTCTTTACAAGGACATTAAGCTGCAGGGCAACCTTTTTCCCAACAGGATAAATATATACTTGAAAATCATCAAAACTGTTGCCTTAAGTAATGTCAAGAGATCAGAGACTATTAGCAATCTGAAGGCACTGTTATGTGAGAAGGAAGGCATTTCAGAAAATTTTCAGGAGCTTTACTTTTCAGGCGACCGGCTTAGCAATGATCACAAGCTAATAGATTGCGGCATAGAACAGAACTCTACTCTCCATCTTTTTCTCCAAACTTCAGGGGTAATGAAACTATTTGTTATCATCGTCTCAAAGCAGAAAACTATTGAGATTGAAGCTAAAATTCAAGATACCATTGAAAATATCAAATCAAAGGTTCGTGCAAAAGAAGGGATTCTATCAGATCAGTATTCTCTCTTTCATGCCGGAATGCTACTCGATAATTTGAGGACCCTGGGTTCTCTTGGCATACGGGGGGAGTCGACTCTTCATTTGGTCTTTAATCCAAGAGATGTTTTGTCGGTGTCCGTGAAAGTGCCTAACGGGGAGATCGTTAAAATGGAAGTTAAACTCTTGTACACTGTCAGGGATGTCAAAGCAGTAGTTGGGAGCATGGCTGGTTTCCCAACAGGTATACAGAGTTCGACTCCCATTGGTGAGCTGAAGAAGCTGATTGAAAGAAAATGGGGAAATCCAGTAAAGGAAGTTTTCCTTGGTGAACGGCCACTTGAGGATCAATTTTCTCTGGGGCACTATGGAATTCTTTATAAGGACATTAAGCTGCAGGGCAACCTTTTTCCGAACAGGATAAATATTTACTTGAAGATCATCAAAACTGTTGCCTTAAGTAATGTCAAGAGATCAGAGACTATTAGCAATCTGAAGGCACTGTTATGCGAGAAGGAAGGCGTTTCAGAAAATTTTCAGGAGCTTTACTTTTCAGGCGAGCGGCTTAGCAATGATCACAAGCTAATAGATTGCGGCATAGAACAGAACTCTACTCTCCATCTTTTTCTCCAAACTTCAGGGGTAATGAAACTATTTGTTATCATCGTCTCAAAGCAGAAAACTATTGAGATCGAAGCTAAAATTCAAGATACCATTGAAAATATCAAATCAAAGGTTCGTGCAAAAGAAGGGATTTGCTCAGATCAGTATTCTCTCTTTCATGCCGGGATGGTACTCGATAATTTCAGGACCCTGGGTTCTCTTGGCATATGGGGGGAATCAACTCTTCACTTGGTCTTTAATCCAAGTGATGTTTTGTTGGTTTCCGTGAAAGTGCCAAACGGAAAGATTGTTAAAATTGAAGTTAAACTCTTGTACACTGTCTGGGATGTCAAAGCAATAGTTGGGAGCATGGCCGGCTTCCCAGTGGGTGATCAGTGTTTAGTTTACGAAGGAAGGCAACTTGAGGATTCAAAGACTTTAGCTTGCTTTGAATTAAAAGAAGATTCAGTGTTAGAGATGGGGCCTTATAAAATTCAGATATTTGTGAAGGTTTGGAGTGGAAAAACCGTTACGGTCTACATTCAACAGAAAGAAACTATCAAAGATGTGAAGGAGAAAGTTTTTCGCAAGTTGTGCTGGCCGACAAATGAATTTCTCAGCCTAATATTTGGCAGTAAACGTCTTGAAGATGGTAGAGATTTGGCTAGTTATGGCATTGAAAAGCAATCCACCCTTCATATGGTTTTTCATCCGACAACTTTTGTTCTCCCTGTTAAGTTATCTAAGATTGGAGACTTTCAGACAGGTAATCTGCAGTCAATTACTACCATTGGTGAGCTGAAGAATATGATTGAAACAAAATGGGAACGGCCGGTAAATGAAATTCTCCTTCGTGGACGGGCACTTAAGGATCAATATTCTCTGGAGCACTATGCCATTGACAAGGAGACTATGCTAGGCATTGATTTTCAGAGCAGCAGAGCGTTTTAA

Network for GWHGAAZE021869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	9	70	5.00E-12
PF00240.24	ubiquitin	78	149	2.30E-14
PF00240.24	ubiquitin	298	359	9.50E-15
PF00240.24	ubiquitin	371	438	2.80E-13
PF00240.24	ubiquitin	547	608	5.10E-15
PF00240.24	ubiquitin	620	686	1.50E-12
PF00240.24	ubiquitin	693	758	2.40E-10
PF00240.24	ubiquitin	765	836	4.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08770	UBC	Ubiquitin mediated proteolysis	map04120
		Mitophagy - animal	map04137
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.863
	SRR3591706	second leaf	1.616
	SRR3591707	mature leaf	1.031
	SRR3591708	Shoot apex	3.159
	SRR3591709	Stem	8.581
	SRR3591710	White floral bud	4.152
	SRR3591711	White flower	3.649
	SRR3591712	Green floral bud	3.743
	SRR3591713	Yellow flower	1.458
SRP173429	SRR8316895	Juvenile bud stage	2.104
	SRR8316896	Juvenile bud stage	2.742
	SRR8316897	Juvenile bud stage	0.444
	SRR8316894	Third green stage	0.635
	SRR8316900	Third green stage	1.558
	SRR8316901	Third green stage	1.177
	SRR8316898	Complete white stage	1.498
	SRR8316899	Complete white stage	3.120
	SRR8316903	Complete white stage	1.695
	SRR8316902	Silver flowering stage	0.718
	SRR8316904	Silver flowering stage	1.220
	SRR8316905	Silver flowering stage	0.330
	SRR8316906	Gold flowering stage	1.268
	SRR8316907	Gold flowering stage	1.552
	SRR8316908	Gold flowering stage	1.113
SRP132670	SRR6706286	Control	0.740
	SRR6706287	Light intensity 50%	0.746
	SRR6706288	Light intensity 20%	0.888
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.965
	CNS0095593	Slightly white alabastrum(diploid) 2	1.507
	CNS0095594	Slightly white alabastrum(diploid) 3	2.141
	CNS0095595	Whole white alabastrum(diploid) 2	1.262
	CNS0095596	Whole white alabastrum(diploid) 3	1.202
	CNS0095597	Whole white alabastrum(diploid) 4	1.440
	CNS0095598	Silvery flower (diploied) 1	1.927
	CNS0095599	Silvery flower (diploied) 2	1.215
	CNS0095600	Silvery flower (diploied) 3	1.685
	CNS0095601	Golden flower (diploid) 1	1.189
	CNS0095602	Golden flower (diploid) 2	2.333
	CNS0095603	Golden flower (diploid) 3	1.839
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.184
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.122
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.314
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.582
	CNS0095610	Silvery flower (tetraploid) 1	0.523
	CNS0095611	Silvery flower (tetraploid) 2	1.110
	CNS0095612	Silvery flower (tetraploid) 3	0.784
	CNS0095613	Golden flower (tetraploid) 1	0.300
	CNS0095614	Golden flower (tetraploid) 2	0.500
	CNS0095615	Golden flower (tetraploid) 3	0.228
CRA001975	CRR073297	Stem 1	1.304
	CRR073298	Stem 2	0.702
	CRR073299	Stem 3	1.163
	CRR073300	Leaf 1	0.996
	CRR073301	Leaf 2	0.596
	CRR073302	Leaf 3	0.607
	CRR073303	Juvenile bud 1	0.912
	CRR073304	Juvenile bud 2	0.611
	CRR073305	Juvenile bud 3	0.719
	CRR073306	Third green 1	0.356
	CRR073307	Third green 2	0.417
	CRR073308	Third green 3	0.249
	CRR073309	Second white 1	0.402
	CRR073310	Second white 2	0.226
	CRR073311	Second white 3	0.322
	CRR073312	Silver flowering 1	0.078
	CRR073313	Silver flowering 2	0.163
	CRR073314	Silver flowering 3	0.119
	CRR073315	Gold flowering 1	0.357
	CRR073316	Gold flowering 2	0.452
	CRR073317	Gold flowering 3	0.301
	CRR073318	Tawny withering 1	2.884
	CRR073319	Tawny withering 2	1.821
	CRR073320	Tawny withering 3	2.279