Detail information of GWHGAAZE021848


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650124.10PREDICTED: uncharacterized protein LOC100266510 isoform X1 [Vitis vinifera]
Swissprottr|Q2QKB4|U2A2B_WHEAT3E-26Splicing factor U2af large subunit B
trEMBLtr|F6H8J3|F6H8J3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48605.1}
TAIR10AT2G33435.12E-57RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6245461862463299-
GWHAAZE00000006mRNA6245461862463299-
GWHAAZE00000006exon6246199562463299-
GWHAAZE00000006exon6246174462461890-
GWHAAZE00000006exon6245820962458367-
GWHAAZE00000006exon6245764262457683-
GWHAAZE00000006exon6245744662457535-
GWHAAZE00000006exon6245642262456532-
GWHAAZE00000006exon6245621262456304-
GWHAAZE00000006exon6245601562456094-
GWHAAZE00000006exon6245461862455503-
GWHAAZE00000006CDS6246199562463299-
GWHAAZE00000006CDS6246174462461890-
GWHAAZE00000006CDS6245820962458367-
GWHAAZE00000006CDS6245764262457683-
GWHAAZE00000006CDS6245744662457535-
GWHAAZE00000006CDS6245642262456532-
GWHAAZE00000006CDS6245621262456304-
GWHAAZE00000006CDS6245601562456094-
GWHAAZE00000006CDS6245461862455503-
Transcript Sequence

Network for GWHGAAZE021848

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_13954700.00025
PF00076.23RRM_15386051.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12837U2AF2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.875
SRR3591706second leaf12.794
SRR3591707mature leaf11.903
SRR3591708Shoot apex15.238
SRR3591709Stem12.128
SRR3591710White floral bud14.011
SRR3591711White flower16.053
SRR3591712Green floral bud14.435
SRR3591713Yellow flower11.806
SRP173429 SRR8316895Juvenile bud stage 7.395
SRR8316896Juvenile bud stage 10.445
SRR8316897Juvenile bud stage 3.590
SRR8316894Third green stage 5.146
SRR8316900Third green stage 11.627
SRR8316901Third green stage 10.365
SRR8316898Complete white stage 2.952
SRR8316899Complete white stage 13.860
SRR8316903Complete white stage 7.318
SRR8316902Silver flowering stage3.321
SRR8316904Silver flowering stage5.677
SRR8316905Silver flowering stage2.310
SRR8316906Gold flowering stage 8.041
SRR8316907Gold flowering stage 6.225
SRR8316908Gold flowering stage 8.454
SRP132670SRR6706286Control6.979
SRR6706287Light intensity 50%7.319
SRR6706288Light intensity 20%7.372
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.956
CNS0095593Slightly white alabastrum(diploid) 25.338
CNS0095594Slightly white alabastrum(diploid) 35.465
CNS0095595Whole white alabastrum(diploid) 25.821
CNS0095596Whole white alabastrum(diploid) 34.127
CNS0095597Whole white alabastrum(diploid) 44.218
CNS0095598Silvery flower (diploied) 111.432
CNS0095599Silvery flower (diploied) 25.700
CNS0095600Silvery flower (diploied) 38.156
CNS0095601Golden flower (diploid) 17.446
CNS0095602Golden flower (diploid) 27.049
CNS0095603Golden flower (diploid) 38.719
CNS0095604Slightly white alabastrum(tetraploid) 17.960
CNS0095605Slightly white alabastrum(tetraploid) 25.878
CNS0095606Slightly white alabastrum(tetraploid) 316.761
CNS0095607Whole white alabastrum(tetraploid) 15.010
CNS0095608Whole white alabastrum(tetraploid) 23.488
CNS0095609Whole white alabastrum(tetraploid) 39.894
CNS0095610Silvery flower (tetraploid) 18.702
CNS0095611Silvery flower (tetraploid) 211.130
CNS0095612Silvery flower (tetraploid) 310.244
CNS0095613Golden flower (tetraploid) 15.251
CNS0095614Golden flower (tetraploid) 28.528
CNS0095615Golden flower (tetraploid) 39.334
CRA001975CRR073297Stem 19.711
CRR073298Stem 28.230
CRR073299Stem 35.886
CRR073300Leaf 18.307
CRR073301Leaf 28.244
CRR073302Leaf 35.518
CRR073303Juvenile bud 15.015
CRR073304Juvenile bud 22.749
CRR073305Juvenile bud 33.834
CRR073306Third green 10.959
CRR073307Third green 20.525
CRR073308Third green 31.085
CRR073309Second white 10.430
CRR073310Second white 21.763
CRR073311Second white 31.225
CRR073312Silver flowering 10.763
CRR073313Silver flowering 20.596
CRR073314Silver flowering 30.708
CRR073315Gold flowering 11.841
CRR073316Gold flowering 26.681
CRR073317Gold flowering 30.688
CRR073318Tawny withering 16.723
CRR073319Tawny withering 25.694
CRR073320Tawny withering 34.773