Detail information of GWHGAAZE021840


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650141.13.7282E-177PREDICTED: actin-related protein 2/3 complex subunit 2B isoform X2 [Vitis vinifera]
Swissprottr|F4IVU1|ARC2B_ARATH9E-115Actin-related protein 2/3 complex subunit 2B
trEMBLtr|D7SZM6|D7SZM6_VITVI2E-177Putative uncharacterized protein {ECO:0000313|EMBL:CBI23704.3}
TAIR10AT2G33385.25E-94actin-related protein C2B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6228818362292835-
GWHAAZE00000006mRNA6228818362292835-
GWHAAZE00000006exon6229261662292835-
GWHAAZE00000006exon6229100962291175-
GWHAAZE00000006exon6229032462290401-
GWHAAZE00000006exon6229010962290241-
GWHAAZE00000006exon6228902162289112-
GWHAAZE00000006exon6228880462288860-
GWHAAZE00000006exon6228859462288648-
GWHAAZE00000006exon6228818362288473-
GWHAAZE00000006CDS6229261662292835-
GWHAAZE00000006CDS6229100962291175-
GWHAAZE00000006CDS6229032462290401-
GWHAAZE00000006CDS6229010962290241-
GWHAAZE00000006CDS6228902162289112-
GWHAAZE00000006CDS6228880462288860-
GWHAAZE00000006CDS6228859462288648-
GWHAAZE00000006CDS6228828662288473-
GWHAAZE00000006three_prime_UTR6228818362288285-
Transcript Sequence

Network for GWHGAAZE021840

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04045.15P34-Arc292515.40E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05758ARPC2 Endocytosis map04144
Regulation of actin cytoskeletonmap04810
Fc gamma R-mediated phagocytosismap04666

Gene Ontology

GO term OntologyName
GO:0030041biological_processactin filament polymerization
GO:0030833biological_processregulation of actin filament polymerization
GO:0034314biological_processArp2/3 complex-mediated actin nucleation
GO:0005885cellular_componentArp2/3 protein complex
GO:0015629cellular_componentactin cytoskeleton

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.197
SRR3591706second leaf14.713
SRR3591707mature leaf3.152
SRR3591708Shoot apex5.793
SRR3591709Stem190.593
SRR3591710White floral bud2.438
SRR3591711White flower1.602
SRR3591712Green floral bud7.258
SRR3591713Yellow flower0.841
SRP173429 SRR8316895Juvenile bud stage 36.808
SRR8316896Juvenile bud stage 20.228
SRR8316897Juvenile bud stage 3.101
SRR8316894Third green stage 3.873
SRR8316900Third green stage 9.378
SRR8316901Third green stage 10.154
SRR8316898Complete white stage 1.373
SRR8316899Complete white stage 5.543
SRR8316903Complete white stage 2.778
SRR8316902Silver flowering stage0.309
SRR8316904Silver flowering stage0.792
SRR8316905Silver flowering stage0.349
SRR8316906Gold flowering stage 0.758
SRR8316907Gold flowering stage 0.657
SRR8316908Gold flowering stage 0.479
SRP132670SRR6706286Control2.834
SRR6706287Light intensity 50%3.720
SRR6706288Light intensity 20%3.362
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.163
CNS0095593Slightly white alabastrum(diploid) 210.882
CNS0095594Slightly white alabastrum(diploid) 316.089
CNS0095595Whole white alabastrum(diploid) 25.769
CNS0095596Whole white alabastrum(diploid) 38.168
CNS0095597Whole white alabastrum(diploid) 46.244
CNS0095598Silvery flower (diploied) 11.090
CNS0095599Silvery flower (diploied) 20.641
CNS0095600Silvery flower (diploied) 30.728
CNS0095601Golden flower (diploid) 10.796
CNS0095602Golden flower (diploid) 20.947
CNS0095603Golden flower (diploid) 31.309
CNS0095604Slightly white alabastrum(tetraploid) 15.133
CNS0095605Slightly white alabastrum(tetraploid) 24.341
CNS0095606Slightly white alabastrum(tetraploid) 314.991
CNS0095607Whole white alabastrum(tetraploid) 15.705
CNS0095608Whole white alabastrum(tetraploid) 25.222
CNS0095609Whole white alabastrum(tetraploid) 37.898
CNS0095610Silvery flower (tetraploid) 11.146
CNS0095611Silvery flower (tetraploid) 21.347
CNS0095612Silvery flower (tetraploid) 31.000
CNS0095613Golden flower (tetraploid) 10.870
CNS0095614Golden flower (tetraploid) 20.839
CNS0095615Golden flower (tetraploid) 30.874
CRA001975CRR073297Stem 155.780
CRR073298Stem 224.697
CRR073299Stem 312.617
CRR073300Leaf 15.907
CRR073301Leaf 24.493
CRR073302Leaf 35.430
CRR073303Juvenile bud 11.685
CRR073304Juvenile bud 21.783
CRR073305Juvenile bud 31.386
CRR073306Third green 10.997
CRR073307Third green 20.299
CRR073308Third green 30.797
CRR073309Second white 10.304
CRR073310Second white 20.107
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.713
CRR073316Gold flowering 20.571
CRR073317Gold flowering 31.007
CRR073318Tawny withering 120.367
CRR073319Tawny withering 217.861
CRR073320Tawny withering 341.934