Gene detail

Detail information of GWHGAAZE021836

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010650147.1	3.5167E-109	PREDICTED: uncharacterized protein LOC100242670 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q96502\|COL2_ARATH	8E-11	Zinc finger protein CONSTANS-LIKE 2
trEMBL	tr\|F6H8P1\|F6H8P1_VITVI	8E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48621.1}
TAIR10	AT1G04500.1	6E-66	CCT motif family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	62241872	62244196	+
GWHAAZE00000006	mRNA	62241872	62244196	+
GWHAAZE00000006	exon	62241872	62241925	+
GWHAAZE00000006	exon	62242022	62242729	+
GWHAAZE00000006	exon	62243124	62243312	+
GWHAAZE00000006	exon	62243631	62243777	+
GWHAAZE00000006	exon	62244089	62244196	+
GWHAAZE00000006	CDS	62241872	62241925	+
GWHAAZE00000006	CDS	62242022	62242729	+
GWHAAZE00000006	CDS	62243124	62243312	+
GWHAAZE00000006	CDS	62243631	62243777	+
GWHAAZE00000006	CDS	62244089	62244196	+

Transcript Sequence
>GWHTAAZE021860 ATGGCAAGTGTAGTACCACACATGAAAAACATGGAGAGATTTAGTAAACAAAAGGAAGAATTCTCAAGCCCACTTAGTACCCAATTTCTAGAATTTTGTGACTCTGATTTATTCCCTCAAACCCTACAAAACTCTGAAGTTGCCTCTACTTCTAACTGTAACCATGAGGATCAATACTCTAATTCCTACACCACAAACCTCTCCTTCACTACCACCACCACCCCAACCACCGCTGCCTCCTCTGCCGCCAACTTATCCCTATTTTTTGACTCGTCTGAAGAGACCGATAACGACATTTCAGCCTCTATAGACTTCACCTCTTCTCCCCCTTTCTCTATCTACGAATTCTTTAGTAATCAACAGTTTGATTTGTCTTTACTACAAGATCAAATCCAACCACCACCACCGGATCATGACGGGACCCAACTAAGGGCACCGTCACTGTATCCTAGTAGTGATGGTATGGGCCCACCACATTTGATGGCCCCACCTCTGACTACCCTTTGTGAGGATCAAGTATTCTTGTCTTCAATGCCTTTGTACATGAGATTGAACCCTTCTTCACCTTCTTCCGGTTCTGTTCTTGATCCTAATAATACACTCAATTCTTACAATTTCAATGGTGGGTTAGATTCACAAAATTCTGGGATTTTCCCTATGGGTCTGCTTCAACCTCAAGAGTTGGAGTTTCAGGGTGATAATGGTGGATTCTTCAATCAAGACCCTCTTAGAGGGAGTAATTATAACTCCAGTGAAATTCAGGCACTAAGTAATGAGAGCCAACGTATGGTGAATGGGGGAAGTTCAACTACTCCTCCATTGGCATCAGAGATAACAAGCTTGGAAGAATCATCTTTCAAGGTCTCCAAACTCTCTGCTGAAGAAAGGAAAGAGAGAATCCATAGATACATGAAGAAAAGAAATCAGAGGAATTTCAGCAAGAAAATTAAGTATGCATGCCGGAAAACATTAGCAGACAGCCGGCCTCGAGTAAGAGGGAGGTTTGCAAAGAACGATGAATTCGGAGAGACCACTACTACTAGAACCACTTGCAGCAATCACGAGGAGGACACCGATGAAGATGCTAGATCTAATCATGTGGCTGTGAAGGAAGAACAAGAAATGGTTGATTCTTCAGATATATTTGCTCATATAAGTGGTCTGAATTCCTTCAGATGCAACTTCCCCATTCAATCTTGGATTTGA

Network for GWHGAAZE021836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06203.15	CCT	296	338	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.747
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.135
	SRR3591708	Shoot apex	0.119
	SRR3591709	Stem	0.948
	SRR3591710	White floral bud	4.834
	SRR3591711	White flower	0.564
	SRR3591712	Green floral bud	9.877
	SRR3591713	Yellow flower	0.070
SRP173429	SRR8316895	Juvenile bud stage	9.290
	SRR8316896	Juvenile bud stage	3.961
	SRR8316897	Juvenile bud stage	10.433
	SRR8316894	Third green stage	1.533
	SRR8316900	Third green stage	5.450
	SRR8316901	Third green stage	4.293
	SRR8316898	Complete white stage	1.537
	SRR8316899	Complete white stage	9.770
	SRR8316903	Complete white stage	1.916
	SRR8316902	Silver flowering stage	1.476
	SRR8316904	Silver flowering stage	1.015
	SRR8316905	Silver flowering stage	0.241
	SRR8316906	Gold flowering stage	0.183
	SRR8316907	Gold flowering stage	0.058
	SRR8316908	Gold flowering stage	0.494
SRP132670	SRR6706286	Control	3.900
	SRR6706287	Light intensity 50%	4.017
	SRR6706288	Light intensity 20%	4.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.052
	CNS0095593	Slightly white alabastrum(diploid) 2	10.108
	CNS0095594	Slightly white alabastrum(diploid) 3	12.936
	CNS0095595	Whole white alabastrum(diploid) 2	8.991
	CNS0095596	Whole white alabastrum(diploid) 3	4.409
	CNS0095597	Whole white alabastrum(diploid) 4	8.867
	CNS0095598	Silvery flower (diploied) 1	3.260
	CNS0095599	Silvery flower (diploied) 2	12.467
	CNS0095600	Silvery flower (diploied) 3	6.065
	CNS0095601	Golden flower (diploid) 1	7.438
	CNS0095602	Golden flower (diploid) 2	8.587
	CNS0095603	Golden flower (diploid) 3	8.471
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.392
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.488
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.304
	CNS0095610	Silvery flower (tetraploid) 1	0.622
	CNS0095611	Silvery flower (tetraploid) 2	0.321
	CNS0095612	Silvery flower (tetraploid) 3	0.674
	CNS0095613	Golden flower (tetraploid) 1	0.186
	CNS0095614	Golden flower (tetraploid) 2	0.190
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.728
	CRR073298	Stem 2	3.180
	CRR073299	Stem 3	2.668
	CRR073300	Leaf 1	5.516
	CRR073301	Leaf 2	6.418
	CRR073302	Leaf 3	3.501
	CRR073303	Juvenile bud 1	6.324
	CRR073304	Juvenile bud 2	7.343
	CRR073305	Juvenile bud 3	5.831
	CRR073306	Third green 1	1.320
	CRR073307	Third green 2	2.635
	CRR073308	Third green 3	1.779
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.477
	CRR073312	Silver flowering 1	0.101
	CRR073313	Silver flowering 2	0.397
	CRR073314	Silver flowering 3	0.186
	CRR073315	Gold flowering 1	0.804
	CRR073316	Gold flowering 2	1.520
	CRR073317	Gold flowering 3	2.996
	CRR073318	Tawny withering 1	0.859
	CRR073319	Tawny withering 2	28.084
	CRR073320	Tawny withering 3	0.765