Detail information of GWHGAAZE021818


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006420221.14.5682E-96hypothetical protein CICLE_v10006173mg [Citrus clementina]
Swissprottr|Q9ZSK2|ADF6_ARATH1E-85Actin-depolymerizing factor 6
trEMBLtr|V4S974|V4S974_9ROSI2E-96Uncharacterized protein {ECO:0000313|EMBL:ESR33461.1}
TAIR10AT2G31200.11E-61actin depolymerizing factor 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6198548361990172-
GWHAAZE00000006mRNA6198548361990172-
GWHAAZE00000006exon6199015261990172-
GWHAAZE00000006exon6198850861988773-
GWHAAZE00000006exon6198548361985633-
GWHAAZE00000006CDS6199015261990172-
GWHAAZE00000006CDS6198850861988773-
GWHAAZE00000006CDS6198548361985633-
Transcript Sequence

Network for GWHGAAZE021818

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00241.21Cofilin_ADF211423.40E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05765CFL Regulation of actin cytoskeleton map04810
Fc gamma R-mediated phagocytosismap04666
Axon guidancemap04360

Gene Ontology

GO term OntologyName
GO:0030042biological_processactin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.893
SRR3591706second leaf97.954
SRR3591707mature leaf139.273
SRR3591708Shoot apex86.840
SRR3591709Stem91.123
SRR3591710White floral bud93.463
SRR3591711White flower207.447
SRR3591712Green floral bud71.908
SRR3591713Yellow flower174.149
SRP173429 SRR8316895Juvenile bud stage 31.891
SRR8316896Juvenile bud stage 40.791
SRR8316897Juvenile bud stage 14.379
SRR8316894Third green stage 19.187
SRR8316900Third green stage 63.488
SRR8316901Third green stage 69.364
SRR8316898Complete white stage 39.844
SRR8316899Complete white stage 117.487
SRR8316903Complete white stage 57.537
SRR8316902Silver flowering stage47.000
SRR8316904Silver flowering stage44.052
SRR8316905Silver flowering stage23.402
SRR8316906Gold flowering stage 101.140
SRR8316907Gold flowering stage 109.081
SRR8316908Gold flowering stage 71.787
SRP132670SRR6706286Control66.862
SRR6706287Light intensity 50%57.944
SRR6706288Light intensity 20%64.070
CNP0000432CNS0095592Slightly white alabastrum(diploid) 144.781
CNS0095593Slightly white alabastrum(diploid) 245.688
CNS0095594Slightly white alabastrum(diploid) 332.749
CNS0095595Whole white alabastrum(diploid) 236.117
CNS0095596Whole white alabastrum(diploid) 333.521
CNS0095597Whole white alabastrum(diploid) 430.710
CNS0095598Silvery flower (diploied) 154.227
CNS0095599Silvery flower (diploied) 272.783
CNS0095600Silvery flower (diploied) 3110.996
CNS0095601Golden flower (diploid) 190.583
CNS0095602Golden flower (diploid) 2113.250
CNS0095603Golden flower (diploid) 3108.047
CNS0095604Slightly white alabastrum(tetraploid) 134.911
CNS0095605Slightly white alabastrum(tetraploid) 229.002
CNS0095606Slightly white alabastrum(tetraploid) 357.518
CNS0095607Whole white alabastrum(tetraploid) 127.803
CNS0095608Whole white alabastrum(tetraploid) 223.092
CNS0095609Whole white alabastrum(tetraploid) 328.157
CNS0095610Silvery flower (tetraploid) 174.760
CNS0095611Silvery flower (tetraploid) 279.418
CNS0095612Silvery flower (tetraploid) 374.959
CNS0095613Golden flower (tetraploid) 155.926
CNS0095614Golden flower (tetraploid) 267.678
CNS0095615Golden flower (tetraploid) 3105.180
CRA001975CRR073297Stem 190.187
CRR073298Stem 280.635
CRR073299Stem 3105.549
CRR073300Leaf 189.193
CRR073301Leaf 296.645
CRR073302Leaf 396.126
CRR073303Juvenile bud 1128.939
CRR073304Juvenile bud 2158.406
CRR073305Juvenile bud 3115.553
CRR073306Third green 1134.289
CRR073307Third green 2151.250
CRR073308Third green 3130.577
CRR073309Second white 1141.961
CRR073310Second white 2111.885
CRR073311Second white 379.793
CRR073312Silver flowering 1151.546
CRR073313Silver flowering 2212.913
CRR073314Silver flowering 3186.719
CRR073315Gold flowering 1120.700
CRR073316Gold flowering 2132.931
CRR073317Gold flowering 3132.943
CRR073318Tawny withering 184.132
CRR073319Tawny withering 297.755
CRR073320Tawny withering 364.366