Gene detail

Detail information of GWHGAAZE021815

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW54833.1	5.99197E-53	hypothetical protein EUGRSUZ_I007772, partial [Eucalyptus grandis]
COG	YP_004696643.1	7E-17	serine/threonine protein kinase
Swissprot	tr\|O22187\|Y2232_ARATH	2E-47	Probable receptor-like protein kinase At2g23200 (Precursor)
trEMBL	tr\|A0A059ALV6\|A0A059ALV6_EUCGR	2E-53	Uncharacterized protein {ECO:0000313\|EMBL:KCW54833.1} (Fragment)
TAIR10	AT2G23200.1	3E-42	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61941437	61942099	+
GWHAAZE00000006	mRNA	61941437	61942099	+
GWHAAZE00000006	exon	61941437	61942099	+
GWHAAZE00000006	CDS	61941437	61942099	+

Transcript Sequence
>GWHTAAZE021839 ATGCAAGGCGGAACAGTTGCCAAACGTGTGCTCAACAAAACCACCAGTGGTAGTGGTCCTCCACCGGAGCCTTTATCCTGGGTGCAGCGTCTCAACATATGCATAGGCGCCGCGGATGGGTTGAATTATATACACAGCAAGGGCACTGATCACGGCTGTAGATACATACATCGCGACATTAAAAGCTCCAACATTCTGCTGAATGAGAAGTTGGAAGCTAAAGTCGCCGACTTTGGGTTGGCGAAACTAACCCCACCGGACCGGTCGTATTACGTGGGCCAAAAATACATCAAAGGCACGGTAGGGTATCTTGACCCGGCGTATAAGGAGACCAAGAAACTGACGAGGAGATCCGACGTGTACTCTTTTGGAGTGGTGATGCTAGAAATTCTGTGTGGGAGGTATGCGGCGGATCCAGATTTCCCACGGAATCAACAGCTCCTAACTAAATGGGCCAATCCGATCATTCAGACGGTAACTGAAAATGAAATCCGGAAGATTATTGATGACAGGATCGTGAACGAAATTCAGTGGGGTTCTCTGGAGGAGTACGTGAAGATAGTCAATCAATGCCTAGACCACGATCCAAACAAACGCCCTTCAATGCTTGAGGTGCTGGACCGGCTTCGCAACGCCTTGTTGTTGCAACAGGCTATCAATTAA

Network for GWHGAAZE021815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	22	209	1.50E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.623
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.323
	SRR3591709	Stem	2.732
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	1.858
SRP173429	SRR8316895	Juvenile bud stage	0.569
	SRR8316896	Juvenile bud stage	1.088
	SRR8316897	Juvenile bud stage	1.115
	SRR8316894	Third green stage	1.178
	SRR8316900	Third green stage	5.286
	SRR8316901	Third green stage	6.826
	SRR8316898	Complete white stage	1.208
	SRR8316899	Complete white stage	19.384
	SRR8316903	Complete white stage	0.499
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	0.057
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	3.000
	SRR8316907	Gold flowering stage	1.793
	SRR8316908	Gold flowering stage	3.416
SRP132670	SRR6706286	Control	4.485
	SRR6706287	Light intensity 50%	4.819
	SRR6706288	Light intensity 20%	4.401
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.672
	CNS0095593	Slightly white alabastrum(diploid) 2	2.774
	CNS0095594	Slightly white alabastrum(diploid) 3	0.372
	CNS0095595	Whole white alabastrum(diploid) 2	2.245
	CNS0095596	Whole white alabastrum(diploid) 3	2.196
	CNS0095597	Whole white alabastrum(diploid) 4	1.863
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.064
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.401
	CNS0095602	Golden flower (diploid) 2	2.580
	CNS0095603	Golden flower (diploid) 3	1.847
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.842
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.642
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.677
	CNS0095610	Silvery flower (tetraploid) 1	0.498
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.013
	CNS0095613	Golden flower (tetraploid) 1	0.960
	CNS0095614	Golden flower (tetraploid) 2	0.883
	CNS0095615	Golden flower (tetraploid) 3	4.301
CRA001975	CRR073297	Stem 1	0.504
	CRR073298	Stem 2	0.343
	CRR073299	Stem 3	0.687
	CRR073300	Leaf 1	6.172
	CRR073301	Leaf 2	4.241
	CRR073302	Leaf 3	4.715
	CRR073303	Juvenile bud 1	7.650
	CRR073304	Juvenile bud 2	2.664
	CRR073305	Juvenile bud 3	15.830
	CRR073306	Third green 1	0.597
	CRR073307	Third green 2	0.271
	CRR073308	Third green 3	0.263
	CRR073309	Second white 1	0.267
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.829
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.088
	CRR073314	Silver flowering 3	0.297
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.006
	CRR073317	Gold flowering 3	0.133
	CRR073318	Tawny withering 1	13.463
	CRR073319	Tawny withering 2	6.983
	CRR073320	Tawny withering 3	14.512