Detail information of GWHGAAZE021809


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011091215.10PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 3 isoform X1 [Sesamum indicum]
COGYP_008797523.13E-36protein phosphatase
Swissprottr|P48489|PP1_ORYSJ5E-167Serine/threonine-protein phosphatase PP1
trEMBLtr|M1BCB8|M1BCB8_SOLTU0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT2G39840.11E-132type one serine/threonine protein phosphatase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6178470761787576+
GWHAAZE00000006mRNA6178470761787576+
GWHAAZE00000006exon6178470761784711+
GWHAAZE00000006exon6178512561785207+
GWHAAZE00000006exon6178527561785834+
GWHAAZE00000006exon6178615561786379+
GWHAAZE00000006exon6178750861787576+
GWHAAZE00000006CDS6178470761784711+
GWHAAZE00000006CDS6178512561785207+
GWHAAZE00000006CDS6178527561785834+
GWHAAZE00000006CDS6178615561786379+
GWHAAZE00000006CDS6178750861787576+
Transcript Sequence

Network for GWHGAAZE021809

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00149.29Metallophos312174.20E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06269PPP1C mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Cellular senescencemap04218
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.137
SRR3591706second leaf39.876
SRR3591707mature leaf71.559
SRR3591708Shoot apex45.290
SRR3591709Stem72.820
SRR3591710White floral bud70.598
SRR3591711White flower100.107
SRR3591712Green floral bud67.862
SRR3591713Yellow flower83.105
SRP173429 SRR8316895Juvenile bud stage 34.997
SRR8316896Juvenile bud stage 46.725
SRR8316897Juvenile bud stage 22.537
SRR8316894Third green stage 22.164
SRR8316900Third green stage 63.519
SRR8316901Third green stage 59.841
SRR8316898Complete white stage 48.400
SRR8316899Complete white stage 92.374
SRR8316903Complete white stage 67.946
SRR8316902Silver flowering stage53.812
SRR8316904Silver flowering stage63.855
SRR8316905Silver flowering stage29.447
SRR8316906Gold flowering stage 81.290
SRR8316907Gold flowering stage 86.595
SRR8316908Gold flowering stage 87.750
SRP132670SRR6706286Control34.544
SRR6706287Light intensity 50%33.667
SRR6706288Light intensity 20%39.391
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.588
CNS0095593Slightly white alabastrum(diploid) 241.927
CNS0095594Slightly white alabastrum(diploid) 340.437
CNS0095595Whole white alabastrum(diploid) 235.213
CNS0095596Whole white alabastrum(diploid) 332.245
CNS0095597Whole white alabastrum(diploid) 433.795
CNS0095598Silvery flower (diploied) 144.922
CNS0095599Silvery flower (diploied) 242.690
CNS0095600Silvery flower (diploied) 390.265
CNS0095601Golden flower (diploid) 145.540
CNS0095602Golden flower (diploid) 268.344
CNS0095603Golden flower (diploid) 370.080
CNS0095604Slightly white alabastrum(tetraploid) 140.154
CNS0095605Slightly white alabastrum(tetraploid) 236.414
CNS0095606Slightly white alabastrum(tetraploid) 365.113
CNS0095607Whole white alabastrum(tetraploid) 136.596
CNS0095608Whole white alabastrum(tetraploid) 226.524
CNS0095609Whole white alabastrum(tetraploid) 351.306
CNS0095610Silvery flower (tetraploid) 194.431
CNS0095611Silvery flower (tetraploid) 295.607
CNS0095612Silvery flower (tetraploid) 3121.913
CNS0095613Golden flower (tetraploid) 168.740
CNS0095614Golden flower (tetraploid) 272.963
CNS0095615Golden flower (tetraploid) 382.380
CRA001975CRR073297Stem 138.474
CRR073298Stem 234.986
CRR073299Stem 334.865
CRR073300Leaf 135.407
CRR073301Leaf 235.110
CRR073302Leaf 339.675
CRR073303Juvenile bud 145.282
CRR073304Juvenile bud 234.070
CRR073305Juvenile bud 353.157
CRR073306Third green 147.396
CRR073307Third green 244.593
CRR073308Third green 344.377
CRR073309Second white 179.458
CRR073310Second white 267.232
CRR073311Second white 354.711
CRR073312Silver flowering 156.853
CRR073313Silver flowering 257.118
CRR073314Silver flowering 349.011
CRR073315Gold flowering 145.181
CRR073316Gold flowering 267.769
CRR073317Gold flowering 368.164
CRR073318Tawny withering 155.171
CRR073319Tawny withering 256.793
CRR073320Tawny withering 345.246