Gene detail

Detail information of GWHGAAZE021808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG15362.1	0	U4/U6.U5 tri-snRNP-associated 2 [Gossypium arboreum]
Swissprot	tr\|Q9LEW0\|UBP22_ARATH	2E-10	Ubiquitin carboxyl-terminal hydrolase 22
trEMBL	tr\|A0A061GH26\|A0A061GH26_THECC	0	Ubiquitin C-terminal hydrolases superfamily protein {ECO:0000313\|EMBL:EOY28881.1}
TAIR10	AT4G22350.1	0	Ubiquitin C-terminal hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61781850	61783178	-
GWHAAZE00000006	mRNA	61781850	61783178	-
GWHAAZE00000006	exon	61781850	61783178	-
GWHAAZE00000006	CDS	61781850	61783178	-

Transcript Sequence
>GWHTAAZE021832 ATGAGCGGGGGAGAGGAAGCCAACCCTAAAAGGCATTCACCTCCTCAGAGAGAGTGCCCCTATCTTCACACCATTAATCGCCAGGTTTTGGATTTTGATTTTGAGAAGTTCTGTTCTGTCTCTCTTTCAAATTTCAACATGTATGCGTGTTTGGTCTGCGGTAAGTATTACCAAGGAAGAGGGCATAAATCTCATGCATACACTCATAGCCTTGAAGCAGGCCACCATGTCTACATCAATCTTCAGACCGAAAAAGTTTACTGCCTTCCTGATCGATATGAAATTAATGACCCATCATTAGATGATATTTGTCATGTTCTTAATCCAAGATTTAGTAGGGAGCAAGTTGTCCAGCTTGATGAAAACAAGCAATGGTCCAGGGCACTTGACGGTTCTGATTATCTTCCTGGAATGATCGGACTGAACAACATTAAAGAGACAGATTTTGTTAATGTCACAATTCAGTCTCTAATGGGAGTTACTCTGTTGAGGAACTTTTTCCTAATTCCTGAAAACTACAAGCACAGCAAGTTGGTACTTGTTCATGGTTTTGGAGAGCTAACGAGAAAGATATGGCATGCCCGCAACTTCAAGGGGCAGGTGAACCCGCATGAGTTTCTGCAGGCAGTTATGAAAGCTAGTGAAAAACGTTTTCGAATAGGTGTAAAGTCGAAGCCAGATGAGTTTATGACGTGGCTTCTTGATACACTACATAAAGATCTTAGGACTTCAAAGAGAAGTAGCAGCATAATCCATCAGTGTTTTCAGGGAGAATTGAGGGTTGTGGAAGAGATTTGTGGTGGACCGAAAGAAGGGACTAATTTTCTTAAAAAGACTAGCAGGATGCCATTTCTAATGTTGGGACTCAATTTGCCACCGGCTCCTCTTTTTAAAGATGTTACGGAGAAAAATATAATCCCTCAGGTTCCACTTTCCAATATACTGAAGAAGTTTGATGGCGAGTTTGTCACAGAAGTTGGGAGCCCTCGTATAGCGAGATTGAGATATCGTGTTACGAGATTGCCCCAGTATCTAATCCTCCACGTGCACCGATTCACCAAGAACAAAGAGAAGAATTCCACCCTTGTTAATTTTCCGGTTAAGAATCTAGAGCTGAAAGACTATATTCTGTTGCCGGAGGAAGAATCGCCAACAAAATATGATTTAATTTCGAATATTGCTCACGATGATGGATCGTACAGGGTATCTGTTCACCGCAAATCTGAGGAACAATGGTATGAGATGCAGGACCTGCATGTGTCGGAAACTCTTCCTCAGATGGTCACGCTCTCCGAGGCTTACATGCAACTATATGAGCAACAAAAGTGA

Network for GWHGAAZE021808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02148.20	zf-UBP	38	99	1.40E-13
PF00443.30	UCH	139	438	1.50E-30

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K12847	USP39, SAD1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000245	biological_process	spliceosomal complex assembly
GO:0006397	biological_process	mRNA processing
GO:0016579	biological_process	protein deubiquitination
GO:0008270	molecular_function	zinc ion binding
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.134
	SRR3591706	second leaf	0.089
	SRR3591707	mature leaf	0.251
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.300
	SRR3591711	White flower	0.121
	SRR3591712	Green floral bud	0.057
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.147
	SRR8316897	Juvenile bud stage	0.142
	SRR8316894	Third green stage	0.146
	SRR8316900	Third green stage	0.094
	SRR8316901	Third green stage	0.028
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	0.304
	SRR8316903	Complete white stage	0.218
	SRR8316902	Silver flowering stage	0.235
	SRR8316904	Silver flowering stage	0.365
	SRR8316905	Silver flowering stage	0.170
	SRR8316906	Gold flowering stage	0.260
	SRR8316907	Gold flowering stage	0.147
	SRR8316908	Gold flowering stage	0.123
SRP132670	SRR6706286	Control	0.097
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.138
	CNS0095593	Slightly white alabastrum(diploid) 2	0.525
	CNS0095594	Slightly white alabastrum(diploid) 3	0.411
	CNS0095595	Whole white alabastrum(diploid) 2	0.144
	CNS0095596	Whole white alabastrum(diploid) 3	0.209
	CNS0095597	Whole white alabastrum(diploid) 4	0.190
	CNS0095598	Silvery flower (diploied) 1	0.555
	CNS0095599	Silvery flower (diploied) 2	0.196
	CNS0095600	Silvery flower (diploied) 3	0.358
	CNS0095601	Golden flower (diploid) 1	0.385
	CNS0095602	Golden flower (diploid) 2	0.180
	CNS0095603	Golden flower (diploid) 3	0.190
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.203
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.055
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.039
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.025
	CNS0095610	Silvery flower (tetraploid) 1	0.464
	CNS0095611	Silvery flower (tetraploid) 2	0.258
	CNS0095612	Silvery flower (tetraploid) 3	0.415
	CNS0095613	Golden flower (tetraploid) 1	0.324
	CNS0095614	Golden flower (tetraploid) 2	0.187
	CNS0095615	Golden flower (tetraploid) 3	0.441
CRA001975	CRR073297	Stem 1	0.161
	CRR073298	Stem 2	0.098
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.098
	CRR073301	Leaf 2	0.137
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.031
	CRR073309	Second white 1	0.012
	CRR073310	Second white 2	0.041
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.092
	CRR073313	Silver flowering 2	0.247
	CRR073314	Silver flowering 3	0.042
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.135
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.189
	CRR073319	Tawny withering 2	0.038
	CRR073320	Tawny withering 3	0.031