Gene detail

Detail information of GWHGAAZE021784

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075752.1	0	PREDICTED: aspartate--tRNA ligase, cytoplasmic [Sesamum indicum]
COG	YP_006705440.1	5E-117	aspartate--tRNA ligase
Swissprot	tr\|O48593\|SYNO_ARATH	2E-33	Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A022QRN3\|A0A022QRN3_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU29160.1}
TAIR10	AT4G31180.2	0	Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61384678	61393832	+
GWHAAZE00000006	mRNA	61384678	61393832	+
GWHAAZE00000006	exon	61384678	61385184	+
GWHAAZE00000006	exon	61386647	61386757	+
GWHAAZE00000006	exon	61386883	61386996	+
GWHAAZE00000006	exon	61388393	61388683	+
GWHAAZE00000006	exon	61388773	61388883	+
GWHAAZE00000006	exon	61389055	61389108	+
GWHAAZE00000006	exon	61391420	61391499	+
GWHAAZE00000006	exon	61391621	61391736	+
GWHAAZE00000006	exon	61392486	61392600	+
GWHAAZE00000006	exon	61393615	61393832	+
GWHAAZE00000006	CDS	61384678	61385184	+
GWHAAZE00000006	CDS	61386647	61386757	+
GWHAAZE00000006	CDS	61386883	61386996	+
GWHAAZE00000006	CDS	61388393	61388683	+
GWHAAZE00000006	CDS	61388773	61388883	+
GWHAAZE00000006	CDS	61389055	61389108	+
GWHAAZE00000006	CDS	61391420	61391499	+
GWHAAZE00000006	CDS	61391621	61391736	+
GWHAAZE00000006	CDS	61392486	61392600	+
GWHAAZE00000006	CDS	61393615	61393741	+
GWHAAZE00000006	three_prime_UTR	61393742	61393832	+

Transcript Sequence
>GWHTAAZE021808 ATGGATTCACTGCCACCCCAACCCCAACACGAAGAACAATCGGAAGGTAGCCAAAGCAAAAAGGCTTCCAAAAAGGAAGCCGCCAAGCTCGAGAAGCTCCGCCGCCGTCAAGAAGCGGCTGCTGCAGCTGCAGGCGTCGCCGGAGTATCAATTGACACCCCCGACCCCCTCGCCGCCAACTACGGCGACGTGCCTCTCGAGGACCTACAGTCCAAGGCGGTCACGGGCCGGAAGTGGACTGAGATCGGCTCGCTTACCGAGGAGCTGAAGGACCAAAGCGTGCTAATACGGGGGCGAGCGCAGACGATCCGAGCGGTTGGCAAGAAGATTGCGTTTATTGTAGTGCGAGAGAAGGGGTTCACAGTTCAATGCGTGTTGACGGTGGCTCCTGACCTTGTTAGTGGACAGATGGTGAAGTTTGCTAACTCTTTGAGTAGAGAATCGTTTATCGATATCGAAGGGATTGTTTCAGTTCCCGGTGTCGCCATTAAAGGTGCAACTCAGCAGGTCGAAGTTCAAGTCAGAAAACTTTATTGCATCAACAAGGCTATGCCTACACTACCTATTATGATAGAGGATGCATCTAGAAGTGAAATTGAAATTGAAAATGCCTTAAAGGCTGGAGAACAGCTAGTCCGAGTGAATCAGGACACTCGTTTAAACTTTAGGATTCTTGATCTGCGCACACCAGCTAATCAGGGGATTTTCCGCGTTCAGTGCCAAGTGGAAAATATATTCAGGCAATTTTTACTATCTGAAGGTTTTGTTGGAATCCATACACCAAAGTTAATAGCAGGCTCAAGTGAAGGTGGTTCAGCTGTTTTCAGACTCGATTACAAAGGGACACCTGCATGTCTAGCGCAGTCACCTCAGCTTCACAAGCAAATGGCTATCTGTGGTGATTTTGGACGAGTTTTTGAGATCGGTCCGGTTTTCAGAGCAGAGGACTCTTTCACGCACAGACATTTGTGTGAATTTACAGGTCTTGATGTTGAAATGGAGATTAAGGAGCATTATTCGGAGGTGATGGATATTGTGGATCGGTTGTTTGTTTCAATGTTTGATAGTTTGAATGAGAGATGCCAGAAAGAACTTGAAGCTATTGGGAAGCAGTACCCCTTTATGCCTCTGAAGTATTTACGGAATACGTTAAAGCTTACATTTCAAGAAGGGGTTCAAATGCTGAAGGAAGCTGGGGTTGAAGTTGATCCCCTTGGGGACCTTAACACGGAATCAGAGAGAACGCTGGGTCAGCTTGTATTGGAAAAGTATGGAACTGAGTTCTATATACTTCACCGATATCCTTTGGCTGTACGACCATTTTATACAATGCCTTGTCCTGATGACCAGTCTTATAGTAATTCATTTGATGTCTTCATTCGAGGGGAGGAAATAATTTCAGGTGCCCAGCGTGTACACGTTCCTGAATTTTTGGAAACCCGAGCACAATCATTAGGAATTGATGTCAAGACAATTTCAACATACATTGATTCCTTCAGGTATGGCGCACCGCCGCATGGTGGATTTGGAGTTGGATTGGAGAGAGTGGTAATGCTCTTCTGTGGGCTAAACAACATCCGGAAAACATCCTTGTTCCCACGCGACCCGCAAAGGATTACTCCTTGATGATAACACTGCATAAAATTACCCGATGCTTTTTTTAATCGTACGACTTTTGTTTTCACTAAGCTAGTTTCTTTCTGAATTATAAACCTGT

Network for GWHGAAZE021784

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	94	178	3.90E-07
PF00152.21	tRNA-synt_2	216	535	2.10E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22503	DARS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006422	biological_process	aspartyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0003676	molecular_function	nucleic acid binding
GO:0000166	molecular_function	nucleotide binding
GO:0004815	molecular_function	aspartate-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.227
	SRR3591706	second leaf	33.759
	SRR3591707	mature leaf	28.563
	SRR3591708	Shoot apex	58.975
	SRR3591709	Stem	51.439
	SRR3591710	White floral bud	57.168
	SRR3591711	White flower	93.313
	SRR3591712	Green floral bud	64.025
	SRR3591713	Yellow flower	88.362
SRP173429	SRR8316895	Juvenile bud stage	42.621
	SRR8316896	Juvenile bud stage	69.186
	SRR8316897	Juvenile bud stage	28.735
	SRR8316894	Third green stage	23.992
	SRR8316900	Third green stage	76.698
	SRR8316901	Third green stage	68.567
	SRR8316898	Complete white stage	31.331
	SRR8316899	Complete white stage	86.257
	SRR8316903	Complete white stage	44.766
	SRR8316902	Silver flowering stage	47.621
	SRR8316904	Silver flowering stage	54.798
	SRR8316905	Silver flowering stage	26.136
	SRR8316906	Gold flowering stage	102.702
	SRR8316907	Gold flowering stage	90.891
	SRR8316908	Gold flowering stage	110.940
SRP132670	SRR6706286	Control	70.663
	SRR6706287	Light intensity 50%	70.409
	SRR6706288	Light intensity 20%	75.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.690
	CNS0095593	Slightly white alabastrum(diploid) 2	63.035
	CNS0095594	Slightly white alabastrum(diploid) 3	59.911
	CNS0095595	Whole white alabastrum(diploid) 2	48.092
	CNS0095596	Whole white alabastrum(diploid) 3	46.467
	CNS0095597	Whole white alabastrum(diploid) 4	42.828
	CNS0095598	Silvery flower (diploied) 1	56.238
	CNS0095599	Silvery flower (diploied) 2	54.752
	CNS0095600	Silvery flower (diploied) 3	93.532
	CNS0095601	Golden flower (diploid) 1	50.096
	CNS0095602	Golden flower (diploid) 2	95.795
	CNS0095603	Golden flower (diploid) 3	90.017
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.866
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.778
	CNS0095606	Slightly white alabastrum(tetraploid) 3	87.724
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.740
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.531
	CNS0095610	Silvery flower (tetraploid) 1	112.671
	CNS0095611	Silvery flower (tetraploid) 2	96.224
	CNS0095612	Silvery flower (tetraploid) 3	81.956
	CNS0095613	Golden flower (tetraploid) 1	70.922
	CNS0095614	Golden flower (tetraploid) 2	97.269
	CNS0095615	Golden flower (tetraploid) 3	87.419
CRA001975	CRR073297	Stem 1	63.025
	CRR073298	Stem 2	61.637
	CRR073299	Stem 3	62.439
	CRR073300	Leaf 1	73.565
	CRR073301	Leaf 2	66.853
	CRR073302	Leaf 3	69.277
	CRR073303	Juvenile bud 1	75.066
	CRR073304	Juvenile bud 2	61.100
	CRR073305	Juvenile bud 3	77.247
	CRR073306	Third green 1	32.662
	CRR073307	Third green 2	29.677
	CRR073308	Third green 3	31.291
	CRR073309	Second white 1	50.457
	CRR073310	Second white 2	53.391
	CRR073311	Second white 3	44.428
	CRR073312	Silver flowering 1	52.980
	CRR073313	Silver flowering 2	50.951
	CRR073314	Silver flowering 3	61.609
	CRR073315	Gold flowering 1	34.548
	CRR073316	Gold flowering 2	48.538
	CRR073317	Gold flowering 3	33.700
	CRR073318	Tawny withering 1	65.397
	CRR073319	Tawny withering 2	71.441
	CRR073320	Tawny withering 3	67.362