Detail information of GWHGAAZE021775


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009370039.10PREDICTED: probable pectate lyase 8 [Pyrus x bretschneideri]
COGYP_003976318.19E-25pectate lyase family protein
Swissprottr|Q944R1|PLY15_ARATH0Probable pectate lyase 15 (Precursor)
trEMBLtr|A0A068TTV1|A0A068TTV1_COFCA0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT4G13710.11E-178Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6116590161170495-
GWHAAZE00000006mRNA6116590161170495-
GWHAAZE00000006exon6117047061170495-
GWHAAZE00000006exon6116986261169915-
GWHAAZE00000006exon6116899061169061-
GWHAAZE00000006exon6116690761167549-
GWHAAZE00000006exon6116670761166810-
GWHAAZE00000006exon6116632261166460-
GWHAAZE00000006exon6116590161166122-
GWHAAZE00000006CDS6117047061170495-
GWHAAZE00000006CDS6116986261169915-
GWHAAZE00000006CDS6116899061169061-
GWHAAZE00000006CDS6116690761167549-
GWHAAZE00000006CDS6116670761166810-
GWHAAZE00000006CDS6116632261166460-
GWHAAZE00000006CDS6116590161166122-
Transcript Sequence

Network for GWHGAAZE021775

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41523342.60E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf216.063
SRR3591706second leaf190.273
SRR3591707mature leaf14.195
SRR3591708Shoot apex89.209
SRR3591709Stem26.399
SRR3591710White floral bud413.185
SRR3591711White flower18.004
SRR3591712Green floral bud397.193
SRR3591713Yellow flower1.643
SRP173429 SRR8316895Juvenile bud stage 8.355
SRR8316896Juvenile bud stage 13.160
SRR8316897Juvenile bud stage 5.071
SRR8316894Third green stage 23.523
SRR8316900Third green stage 127.807
SRR8316901Third green stage 125.668
SRR8316898Complete white stage 133.273
SRR8316899Complete white stage 365.718
SRR8316903Complete white stage 200.548
SRR8316902Silver flowering stage9.772
SRR8316904Silver flowering stage20.334
SRR8316905Silver flowering stage15.419
SRR8316906Gold flowering stage 6.354
SRR8316907Gold flowering stage 3.746
SRR8316908Gold flowering stage 12.466
SRP132670SRR6706286Control138.102
SRR6706287Light intensity 50%156.595
SRR6706288Light intensity 20%163.168
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.413
CNS0095593Slightly white alabastrum(diploid) 245.664
CNS0095594Slightly white alabastrum(diploid) 311.769
CNS0095595Whole white alabastrum(diploid) 234.900
CNS0095596Whole white alabastrum(diploid) 342.898
CNS0095597Whole white alabastrum(diploid) 432.691
CNS0095598Silvery flower (diploied) 11.153
CNS0095599Silvery flower (diploied) 21.126
CNS0095600Silvery flower (diploied) 35.396
CNS0095601Golden flower (diploid) 10.527
CNS0095602Golden flower (diploid) 20.797
CNS0095603Golden flower (diploid) 30.487
CNS0095604Slightly white alabastrum(tetraploid) 154.330
CNS0095605Slightly white alabastrum(tetraploid) 233.734
CNS0095606Slightly white alabastrum(tetraploid) 3151.451
CNS0095607Whole white alabastrum(tetraploid) 123.385
CNS0095608Whole white alabastrum(tetraploid) 225.447
CNS0095609Whole white alabastrum(tetraploid) 391.192
CNS0095610Silvery flower (tetraploid) 14.182
CNS0095611Silvery flower (tetraploid) 23.741
CNS0095612Silvery flower (tetraploid) 317.477
CNS0095613Golden flower (tetraploid) 10.260
CNS0095614Golden flower (tetraploid) 23.667
CNS0095615Golden flower (tetraploid) 314.453
CRA001975CRR073297Stem 1124.872
CRR073298Stem 2169.182
CRR073299Stem 3145.104
CRR073300Leaf 1551.552
CRR073301Leaf 2324.955
CRR073302Leaf 3438.728
CRR073303Juvenile bud 1465.251
CRR073304Juvenile bud 2641.230
CRR073305Juvenile bud 3501.244
CRR073306Third green 1240.092
CRR073307Third green 2187.776
CRR073308Third green 3235.201
CRR073309Second white 126.483
CRR073310Second white 29.878
CRR073311Second white 32.968
CRR073312Silver flowering 10.578
CRR073313Silver flowering 20.767
CRR073314Silver flowering 30.392
CRR073315Gold flowering 15.610
CRR073316Gold flowering 23.771
CRR073317Gold flowering 320.664
CRR073318Tawny withering 160.103
CRR073319Tawny withering 225.636
CRR073320Tawny withering 366.146