Gene detail

Detail information of GWHGAAZE021761

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649893.1	0	PREDICTED: probable serine/threonine-protein kinase WNK9 [Vitis vinifera]
COG	YP_004284573.1	1E-20	putative serine/threonine protein kinase
Swissprot	tr\|Q9CAV6\|WNK1_ARATH	0	Serine/threonine-protein kinase WNK1
trEMBL	tr\|F6HDP8\|F6HDP8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50419.1}
TAIR10	AT3G04910.1	0	with no lysine (K) kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60902518	60907632	-
GWHAAZE00000006	mRNA	60902518	60907632	-
GWHAAZE00000006	exon	60902518	60903443	-
GWHAAZE00000006	exon	60903677	60904106	-
GWHAAZE00000006	exon	60904333	60904490	-
GWHAAZE00000006	exon	60905769	60905989	-
GWHAAZE00000006	exon	60906808	60907035	-
GWHAAZE00000006	exon	60907398	60907435	-
GWHAAZE00000006	exon	60907558	60907632	-
GWHAAZE00000006	CDS	60907558	60907632	-
GWHAAZE00000006	CDS	60907398	60907435	-
GWHAAZE00000006	CDS	60906808	60907035	-
GWHAAZE00000006	CDS	60905769	60905989	-
GWHAAZE00000006	CDS	60904333	60904490	-
GWHAAZE00000006	CDS	60903677	60904106	-
GWHAAZE00000006	CDS	60902518	60903443	-

Transcript Sequence
>GWHTAAZE021785 ATGAATGGTGCTAATGCACTTGACAAAGACCAATCTGAGTTTGTTGAAGTTGATCCTACTGGTAGATATGGAAGGTACAATGAAATTCTTGGCAAAGGAGCTTCAAAGACAGTTTATAAGGGTTTTGATGAGTACGAAGGGACTGAAGTGGCTTGGAACCAAGTAAAACTTTATGATTTTCTACAAAGCCCTGAAGATCTTGAGAGGCTGTATTGTGAAATTCATCTGCTAAAGACATTGAAACACAGCAATATCATGAAGTTTTACACTTCTTGGGTTGATACTGCCAACAGGAACATAAACTTTGTTACAGAGATGTTCACCTCTGGTACTCTTAGACAGTTTAGGCAAAAACACAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGTAGGCAGATCTTGAGAGGACTTGTATACCTCCACAGCCATGACCCACCTGTCATACACAGAGATCTCAAGTGCGACAACATTTTTGTCAATGGCAACCGAGGGGAAGTCAAGATTGGTGATTTGGGCCTTGCCGCTGTCCACCGTAAATCCGACACCGCTCGCTGCGTTGGGACACCAGAGTTCATGGCCCCAGAAGTGTATGAAGAGGAATACAATGAATTAGTAGACATTTACGCCTTTGGAATGTGTGTTTTGGAAATGGTCACCTTTGAATATCCTTATAGTGAATGCACCCACCCTGCTCAGATCTACAAGAAAGTCATCTCGGGTAAAAAGCCAGATGCTCTATACAAAGTCAACAATCCCGAGGTTCAAAAATTCGTTGAGAAGTGTTTAGCCACTGTATCTCGTAGGCTCCCTGCCTGTGAGCTTCTTATGGACCCTTTTCTCCAAATCCCCGATGATGGGTCCACATTGAGGTCATTAGATTATTTTGGATATTTTGAAGGCATAGACCCGAGGTTAAGATCGCCTCCCTCAGAATTTCATCATCTTGGTTACTCTAGTTATCTTGGTTACGAGTCTTATGATCAAGAGAATGACTTATATTGCGATCTGCCTTACATTGAATCAAATGAAATCAATCTATTCACAAGCCACGACAATGAGAATTGGGGAAATGCCAAAATCACCATCAAGGGTATGAGGAGGGAAGATGATGGTATTTTCTTAAGGATCAGAATGGCTGACAAAGAAGGGCATGTGCGGAACATATCCTTCCCGTTCGACATTGAAGCCGACACGGCTTTGAGTGTTGCTAGTGAAATGGTGACCGAGCTAGATATGAACCACGAAGACATGACCAAAATAGCCAATATGATTGATGGTGAGATTGTATGCTTGATACCTGAGTGGAAGAGAGGGCCCCATGTAAAAGAATGTACCTCTCACTGTCAAAATTGTGGTTCGAATGGCTCTTTTATAAACAATCCAAGTGCCAAGAACGCGCAAGTTCTTCAATTTCATGGCCGGTTTGAAGAGGCCACGCAACAATGCGAAGGGTCGGACCAATGTGTTACCGAAGGTGCACCTGTGGGATCAAGCCAATCAAATGGCATACGCTATTCTGGCATTTGGGCGCAGCTTAGTGGAACCGAATTAAGCTCGCAAGCACCTGTAGTTCATCACTTGGACCACGAACACGAGCAATTTCAAGATCCAAGACTAGGCAAGGATGAGAGCATTATAAATACAGATGCGCAGAGTAAGTCTAATGCGTCGGAAAGTTCATCAGTGGCTTGTGATCTAGCAGAGGACTATGAGAAAGATATAAGGCAAGAATTGAGGTGGCTCAAGGCTAAGTATCAAATGCAGTTGAGGGAGCTAAGAGATCAACAAGTGGAAGTGGTATCGAAATCCTTGCCTTTGGACTCTTTTAAAAAAGAAATCAAGAAAGATGTATCTAACGATGAATTGCTACTAAAATCTTTTGAATCGGGGAAGAATCACAGTTCGTGTTTCCTGATTCAACTTGAGGAGAAATGGGCAAAAACTGAGGCAAAATGGGCAAACCGGAGGGTCCAAAACTATGAGGCAGCTTATGGGTCATGTAGTCCACTGCATATGGTTCCACAGTCACTGCATAGGGCTACTTCTCTTCCAGTTGATGCTGTAGATTTCTAA

Network for GWHGAAZE021761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	281	4.70E-48
PF12202.9	OSR1_C	375	426	1.50E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.905
	SRR3591706	second leaf	12.466
	SRR3591707	mature leaf	1.543
	SRR3591708	Shoot apex	18.342
	SRR3591709	Stem	6.989
	SRR3591710	White floral bud	166.697
	SRR3591711	White flower	19.995
	SRR3591712	Green floral bud	62.862
	SRR3591713	Yellow flower	2.773
SRP173429	SRR8316895	Juvenile bud stage	4.376
	SRR8316896	Juvenile bud stage	6.798
	SRR8316897	Juvenile bud stage	2.803
	SRR8316894	Third green stage	8.609
	SRR8316900	Third green stage	29.932
	SRR8316901	Third green stage	26.606
	SRR8316898	Complete white stage	90.885
	SRR8316899	Complete white stage	29.835
	SRR8316903	Complete white stage	151.885
	SRR8316902	Silver flowering stage	20.141
	SRR8316904	Silver flowering stage	40.927
	SRR8316905	Silver flowering stage	21.107
	SRR8316906	Gold flowering stage	32.428
	SRR8316907	Gold flowering stage	21.206
	SRR8316908	Gold flowering stage	14.689
SRP132670	SRR6706286	Control	23.083
	SRR6706287	Light intensity 50%	24.065
	SRR6706288	Light intensity 20%	17.391
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.039
	CNS0095593	Slightly white alabastrum(diploid) 2	10.888
	CNS0095594	Slightly white alabastrum(diploid) 3	3.328
	CNS0095595	Whole white alabastrum(diploid) 2	13.034
	CNS0095596	Whole white alabastrum(diploid) 3	11.709
	CNS0095597	Whole white alabastrum(diploid) 4	7.845
	CNS0095598	Silvery flower (diploied) 1	9.464
	CNS0095599	Silvery flower (diploied) 2	22.411
	CNS0095600	Silvery flower (diploied) 3	66.189
	CNS0095601	Golden flower (diploid) 1	7.387
	CNS0095602	Golden flower (diploid) 2	18.895
	CNS0095603	Golden flower (diploid) 3	18.915
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.394
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.546
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.270
	CNS0095610	Silvery flower (tetraploid) 1	24.810
	CNS0095611	Silvery flower (tetraploid) 2	50.127
	CNS0095612	Silvery flower (tetraploid) 3	303.775
	CNS0095613	Golden flower (tetraploid) 1	7.838
	CNS0095614	Golden flower (tetraploid) 2	10.199
	CNS0095615	Golden flower (tetraploid) 3	21.229
CRA001975	CRR073297	Stem 1	19.832
	CRR073298	Stem 2	22.402
	CRR073299	Stem 3	15.757
	CRR073300	Leaf 1	34.342
	CRR073301	Leaf 2	27.512
	CRR073302	Leaf 3	20.368
	CRR073303	Juvenile bud 1	18.078
	CRR073304	Juvenile bud 2	28.324
	CRR073305	Juvenile bud 3	26.831
	CRR073306	Third green 1	86.078
	CRR073307	Third green 2	41.817
	CRR073308	Third green 3	53.056
	CRR073309	Second white 1	30.785
	CRR073310	Second white 2	23.788
	CRR073311	Second white 3	9.333
	CRR073312	Silver flowering 1	1.028
	CRR073313	Silver flowering 2	0.956
	CRR073314	Silver flowering 3	0.546
	CRR073315	Gold flowering 1	1.594
	CRR073316	Gold flowering 2	1.716
	CRR073317	Gold flowering 3	1.108
	CRR073318	Tawny withering 1	6.730
	CRR073319	Tawny withering 2	6.831
	CRR073320	Tawny withering 3	5.118