Gene detail

Detail information of GWHGAAZE021753

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759400.1	0	PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]
COG	YP_005034568.1	0	isoleucyl-tRNA synthetase
Swissprot	tr\|P93736\|SYV_ARATH	3E-18	Valine--tRNA ligase
trEMBL	tr\|F6HYQ5\|F6HYQ5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59819.1}
TAIR10	AT4G10320.1	0	tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60766466	60789326	+
GWHAAZE00000006	mRNA	60766466	60789326	+
GWHAAZE00000006	exon	60766466	60766999	+
GWHAAZE00000006	exon	60767743	60767808	+
GWHAAZE00000006	exon	60769725	60769868	+
GWHAAZE00000006	exon	60770982	60771202	+
GWHAAZE00000006	exon	60773051	60773216	+
GWHAAZE00000006	exon	60773841	60773915	+
GWHAAZE00000006	exon	60774188	60774285	+
GWHAAZE00000006	exon	60774677	60774755	+
GWHAAZE00000006	exon	60775199	60775357	+
GWHAAZE00000006	exon	60776192	60776281	+
GWHAAZE00000006	exon	60776534	60776602	+
GWHAAZE00000006	exon	60777973	60778106	+
GWHAAZE00000006	exon	60778999	60779158	+
GWHAAZE00000006	exon	60779522	60779605	+
GWHAAZE00000006	exon	60779726	60779938	+
GWHAAZE00000006	exon	60780704	60780829	+
GWHAAZE00000006	exon	60783404	60783541	+
GWHAAZE00000006	exon	60783666	60783769	+
GWHAAZE00000006	exon	60783850	60783913	+
GWHAAZE00000006	exon	60784753	60784841	+
GWHAAZE00000006	exon	60785231	60785372	+
GWHAAZE00000006	exon	60786309	60786372	+
GWHAAZE00000006	exon	60786459	60786526	+
GWHAAZE00000006	exon	60786642	60786764	+
GWHAAZE00000006	exon	60787571	60787636	+
GWHAAZE00000006	exon	60787833	60787944	+
GWHAAZE00000006	exon	60788061	60788152	+
GWHAAZE00000006	exon	60788847	60789326	+
GWHAAZE00000006	CDS	60766466	60766999	+
GWHAAZE00000006	CDS	60767743	60767808	+
GWHAAZE00000006	CDS	60769725	60769868	+
GWHAAZE00000006	CDS	60770982	60771202	+
GWHAAZE00000006	CDS	60773051	60773216	+
GWHAAZE00000006	CDS	60773841	60773915	+
GWHAAZE00000006	CDS	60774188	60774285	+
GWHAAZE00000006	CDS	60774677	60774755	+
GWHAAZE00000006	CDS	60775199	60775357	+
GWHAAZE00000006	CDS	60776192	60776281	+
GWHAAZE00000006	CDS	60776534	60776602	+
GWHAAZE00000006	CDS	60777973	60778106	+
GWHAAZE00000006	CDS	60778999	60779158	+
GWHAAZE00000006	CDS	60779522	60779605	+
GWHAAZE00000006	CDS	60779726	60779938	+
GWHAAZE00000006	CDS	60780704	60780829	+
GWHAAZE00000006	CDS	60783404	60783541	+
GWHAAZE00000006	CDS	60783666	60783769	+
GWHAAZE00000006	CDS	60783850	60783913	+
GWHAAZE00000006	CDS	60784753	60784841	+
GWHAAZE00000006	CDS	60785231	60785372	+
GWHAAZE00000006	CDS	60786309	60786372	+
GWHAAZE00000006	CDS	60786459	60786526	+
GWHAAZE00000006	CDS	60786642	60786764	+
GWHAAZE00000006	CDS	60787571	60787636	+
GWHAAZE00000006	CDS	60787833	60787944	+
GWHAAZE00000006	CDS	60788061	60788152	+
GWHAAZE00000006	CDS	60788847	60788951	+
GWHAAZE00000006	three_prime_UTR	60788952	60789326	+

Transcript Sequence
>GWHTAAZE021777 ATGGACGACGTAAGCGAAGGCAAGGACTTCTCATTTCCAAAGCAAGAAGAGTCGATCCTCCAATACTGGACAGAAATCAAAGCCTTCGAGACTCAGCTCGATCGCACCAAGAACCTCCCGCCCTACATATTCTATGATGGTCCCCCCTTCGCCACCGGCCTCCCACACTACGGCCACATTCTCGCCGGGACCATCAAGGACGTGGTCACGCGGTACCAGACCATGAGGGGCCACCACGTGATACGCCGGTTCGGATGGGATTGTCACGGGTTGCCCGTGGAACACGAGATTGATAAGAAATTAGGGATTAATAGCAGGGAGGATGTGTTGAAGATGGGGATTGGTAATTATAATGAGGAGTGTAGGGGGATTGTGACGAGGTATGTGGAGGAGTGGGAGAAGATTATTACGAGGACAGGGAGGTGGATTGATTTTAAGAATGATTATAAGACTATGGACTTGAATTTTATGGAGAGTGTGTGGTGGGTTTTTGCCCAGCTTTTTCAGAAGGGGCTTGTTTATAGGGGTTTCAAGGTTATGCCCTACAGTACTGGCTGCAAAACTCCTTTGTCCAATTTTGAAGCCAATTCAAACTACAAGGATGTACCTGATCCTGAAATAATGGTTTCTTTCCCCATAGTTGGCGATCCAGATGCTGCAGCATTTGTGGCCTGGACGACGACGCCGTGGACCCTTCCTAGTAATCTTGCTCTTTGTGTGAATGCAAACTTAGTATACTTAAAGGTCCGCAACAGGTTCACCGGGAAAATCTTCGTGGTTGCTGAGTCTCGATTATCCGAGCTCCCTGTTGAGAAGGCACAAAAAGGAGTACCTAATGGAGCCGTCAATGATTCCGATAAGTCAAATTCTAAGACCAAGGGGTCCTCTACTGCAAAATCTAAGAATACGGTGGAAACTTATGAAGTGTTGGATAAGTTTTCTGGGGCTTCTCTCGTGGGAACTAAGTATGTACCGTTATTTGATTACTTCATGGACTTTTCCGACATGGCATTCAGAGTCGTTGCAGATGATTATGTAACATCTGATAGTGGAACTGGAATCGTTCACTGTGCTCCTGCCTTTGGTGAAGATGATTATCGTGTTTGTATTGAGAATCAAATAATTACTAAGGGAGAGAACTTAGTTGTGGCAGTCGACGATGATGGTTGCTTTACTGAAAGAATTACTGACTTTAGCCGTCGCTATGAGAAAGGCAGGCTTATCAAATCCGGAAGCTTTATGCATTCCTATCCCTTTTGTTGGAGATCTGATACTCCTCTTATCTATAGAGCAGTCCCTAGCTGGTTTGTTGCAGTGGAGAAGTTGAAAGATCAGTTGCTAGAGAACAACAAACAAACGTACTGGGTTCCTGATTTTGTGAAGGAGAAGCGATTCCACAATTGGTTAGAAAATGCAAGAGACTGGGCGGTTAGCCGCAGTCGATTTTGGGGCACTCCCCTTCCTATATGGATGAGTGAAGATGGTGAGGAGATTATAGTTATGGATTCCATCGACAAACTTGAAAAGCTTTCTGGTACCAAGGTGACCGACTTGCATCGTCACAAGATTGATCATATCGCAATTCCATCCAGTCGAGGTCCTGAATTTGGGGTGCTTAAACGTGTGGAGGATGTTGCAAAAGCTAAGACTAAATTCATTGGTACCTTTCGTGTTCCATTACTGGAAGTCTGGAACAGACCAGTCTTTGATTGCTGGTTTGAGAGTGGGTCCATGCCTTATGCTTATATCCATTACCCCTTTGAAAATGTTGAACTCTTCGAGAACAATTTCCCTGGGCACTTTGTGGCTGAGGGGCTGGATCAAACACGTGGATGGTTTTATACTTTAATGGTCCTGTCTACTGCATTATTTCAAAAACCTGCATTTAGAAATCTGATTTGCAATGGACTTGTCCTTGCTGAGGATGGTAAAAAGATGAGTAAAAGACTACAGAATTATCCCTCACCTGTAGCAGTCATTGATGATTATGGGGCTGATGCGTTAAGGTTATACATCATAAACTCTCCGGTTGTTCGTGCTGAGCCTTTACGATTCAAAAAGGATGGAGTATATGGTGTTGTCAGAGATGTTTTTCTGCCATGGTACAATGCATATAGGTTCCTTGTGCAGAATGCAAAGAGACTCGAGGTTGAGGGGCTTGCACCTTTTATTCCTTTTGATCAAGCAATTCTTCAGAAGTCTTCTAATGTGCTTGATCAGTGGATTAACTCGGCAACTCAGAGTTTGGTTCATTTCGTTCGTCAGGAAATGGACGCGTATCGATTATATACGGTGGTTCCTTATCTCTTGAAGTTTCTAGACAATCTAACGAATATATATGTGCGGTTTAACCGCAAGAGATTGAAAGGCCGTTCCGGAGAAGACGACTGCAGAATTGCACTTTCAACTCTTTACCATGTGCTTTTGACTGCTTGTAAAGCAATGGCTCCGTTTACACCGTTCTTTACAGAGGTTCTTTACCAAAATATGAGAAAAATTAGCACCAAATCGGAGGAAAGCATTCACTATTGCAGTTTCCCTGAAGTAGAAGGGAAGAGAGGAGAACGTATTGAACAAAGTGTTAATAGGATGACGACTATCATTGACCTTGCCCGCAATATTCGTGAGCGTCACAACAAACCTTTGAAAACACCACTCAGGGAGATGGTGGTTGTACATCCAGATGCAGAATTCCTTGATGACATCACTGGGAAACTAAAAGAGTATGTGCTAGAGGAACTTAATGTACAATCTCTTGTCCCATGTGATGATACTCTGAAGTATGCTTCGTTACGGGCAGAACCCGATTTCAGTGTGTTAGGTAAAAGGCTGGGAAAATCAATGGGAATTGTTGCAAAAGAAGTTAAGCAAATGTCACAGGAAGATATTTTAGCTTTTGAGAAAGCTGGGGAAGCTACTTTTGGTACACATTGTTTGAAGTTGACCGACATTAAGATTGTGCGAGGATTTAAACGCCCTGATGATAGGACACAAGAAGAAATGGATGCAGCGGGAGATGGTGATGTTTTGGTTATATTGGATTTGCGCCACGATGATTCGTTGCTCAAGGCTGGTGCTGCTCGGGAGATTGTCAATAGGATCCAGAAGTTACGGAAAAAAGCTGGCCTTGAACCTACTGATATGGTGGAGGTCTACTTTAAATCGTTGGATAAAGATACATCAATCTCTCAACAAATTTTGAATTCACAGGAGTCATACATCAGGGGCGCACTTGGTTCTCCTTTGCTCCTGTTTGACATGATCCCACCTCATGCTGTGGTATTTGCTGAGGAGAGTTTTCAGGAAGTTTCAGAGTTATCGTTCACTATCACTCTAGCAAGAGCAGCATTGGTATTCAACACGGATGCTATTCTTGCATTATACACAGGAGAAACAAAATATTCTCAGGCCCTGCAGACGTACTTGTTATCGCGGGATCACTACAATTTGAAGTCAGAATTTCAATTTGGACATGGGAAGATTAAGGTTAGTTGCATTGAAAATCAGCCTTCAGTGGATGTGGTGTTGGGACAACATGTGTTCCTCACATTTGGAGAATACTTCTTAAGCTCAAAACCGAAGTGAGTTTTTCTCCTCCTGATTAGTGTTACAACTTACAAATTGCAAGTCAAGATTGTTTTTGAGAGAAAGGAACTAAACGGATGGAGGATAATACTCAATCCAGCCTGAAGAATTTGCCAGAGACCTGCTTAATTATTACTGCTGTCATGTATACAAGATCAATTGTTGATAAAACCACAAAATTTTCACAATTTGTGATCTTTCTTTACCACTCTTGGGGAAAAAAAATCATAGATCGGTGACTTAGTATGCTGGTTTGCGTATAATGGGTGGCAACTATTGTATTTGGAACAAATATTTACATCAATTTAAAAGGATAGTTTTTTGATTAAAAAATGTTAGCGTTAGTGAGAGTGGAAAGCATGATTTTTGAAAGGT

Network for GWHGAAZE021753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00133.23	tRNA-synt_1	19	681	6.40E-198
PF08264.14	Anticodon_1	739	888	3.30E-28

Protein Sequence

>GWHPAAZE021766
MDDVSEGKDFSFPKQEESILQYWTEIKAFETQLDRTKNLPPYIFYDGPPFATGLPHYGHILAGTIKDVVTRYQTMRGHHVIRRFGWDCHGLPVEHEIDKKLGINSREDVLKMGIGNYNEECRGIVTRYVEEWEKIITRTGRWIDFKNDYKTMDLNFMESVWWVFAQLFQKGLVYRGFKVMPYSTGCKTPLSNFEANSNYKDVPDPEIMVSFPIVGDPDAAAFVAWTTTPWTLPSNLALCVNANLVYLKVRNRFTGKIFVVAESRLSELPVEKAQKGVPNGAVNDSDKSNSKTKGSSTAKSKNTVETYEVLDKFSGASLVGTKYVPLFDYFMDFSDMAFRVVADDYVTSDSGTGIVHCAPAFGEDDYRVCIENQIITKGENLVVAVDDDGCFTERITDFSRRYEKGRLIKSGSFMHSYPFCWRSDTPLIYRAVPSWFVAVEKLKDQLLENNKQTYWVPDFVKEKRFHNWLENARDWAVSRSRFWGTPLPIWMSEDGEEIIVMDSIDKLEKLSGTKVTDLHRHKIDHIAIPSSRGPEFGVLKRVEDVAKAKTKFIGTFRVPLLEVWNRPVFDCWFESGSMPYAYIHYPFENVELFENNFPGHFVAEGLDQTRGWFYTLMVLSTALFQKPAFRNLICNGLVLAEDGKKMSKRLQNYPSPVAVIDDYGADALRLYIINSPVVRAEPLRFKKDGVYGVVRDVFLPWYNAYRFLVQNAKRLEVEGLAPFIPFDQAILQKSSNVLDQWINSATQSLVHFVRQEMDAYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEDDCRIALSTLYHVLLTACKAMAPFTPFFTEVLYQNMRKISTKSEESIHYCSFPEVEGKRGERIEQSVNRMTTIIDLARNIRERHNKPLKTPLREMVVVHPDAEFLDDITGKLKEYVLEELNVQSLVPCDDTLKYASLRAEPDFSVLGKRLGKSMGIVAKEVKQMSQEDILAFEKAGEATFGTHCLKLTDIKIVRGFKRPDDRTQEEMDAAGDGDVLVILDLRHDDSLLKAGAAREIVNRIQKLRKKAGLEPTDMVEVYFKSLDKDTSISQQILNSQESYIRGALGSPLLLFDMIPPHAVVFAEESFQEVSELSFTITLARAALVFNTDAILALYTGETKYSQALQTYLLSRDHYNLKSEFQFGHGKIKVSCIENQPSVDVVLGQHVFLTFGEYFLSSKPK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01870	IARS, ileS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006428	biological_process	isoleucyl-tRNA aminoacylation
GO:0002161	molecular_function	aminoacyl-tRNA editing activity
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0000049	molecular_function	tRNA binding
GO:0004822	molecular_function	isoleucine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.707
	SRR3591706	second leaf	30.424
	SRR3591707	mature leaf	28.511
	SRR3591708	Shoot apex	50.965
	SRR3591709	Stem	46.715
	SRR3591710	White floral bud	32.737
	SRR3591711	White flower	49.187
	SRR3591712	Green floral bud	47.654
	SRR3591713	Yellow flower	36.365
SRP173429	SRR8316895	Juvenile bud stage	28.914
	SRR8316896	Juvenile bud stage	42.794
	SRR8316897	Juvenile bud stage	19.576
	SRR8316894	Third green stage	18.190
	SRR8316900	Third green stage	46.714
	SRR8316901	Third green stage	41.328
	SRR8316898	Complete white stage	11.066
	SRR8316899	Complete white stage	47.250
	SRR8316903	Complete white stage	22.664
	SRR8316902	Silver flowering stage	15.206
	SRR8316904	Silver flowering stage	21.038
	SRR8316905	Silver flowering stage	8.372
	SRR8316906	Gold flowering stage	31.758
	SRR8316907	Gold flowering stage	28.369
	SRR8316908	Gold flowering stage	29.687
SRP132670	SRR6706286	Control	36.051
	SRR6706287	Light intensity 50%	39.102
	SRR6706288	Light intensity 20%	42.609
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.065
	CNS0095593	Slightly white alabastrum(diploid) 2	32.034
	CNS0095594	Slightly white alabastrum(diploid) 3	28.497
	CNS0095595	Whole white alabastrum(diploid) 2	27.657
	CNS0095596	Whole white alabastrum(diploid) 3	26.379
	CNS0095597	Whole white alabastrum(diploid) 4	26.491
	CNS0095598	Silvery flower (diploied) 1	29.480
	CNS0095599	Silvery flower (diploied) 2	27.366
	CNS0095600	Silvery flower (diploied) 3	37.774
	CNS0095601	Golden flower (diploid) 1	22.754
	CNS0095602	Golden flower (diploid) 2	36.469
	CNS0095603	Golden flower (diploid) 3	34.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.333
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.898
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.992
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.782
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.028
	CNS0095610	Silvery flower (tetraploid) 1	45.649
	CNS0095611	Silvery flower (tetraploid) 2	42.382
	CNS0095612	Silvery flower (tetraploid) 3	29.786
	CNS0095613	Golden flower (tetraploid) 1	17.231
	CNS0095614	Golden flower (tetraploid) 2	34.014
	CNS0095615	Golden flower (tetraploid) 3	19.524
CRA001975	CRR073297	Stem 1	31.773
	CRR073298	Stem 2	32.001
	CRR073299	Stem 3	23.112
	CRR073300	Leaf 1	38.921
	CRR073301	Leaf 2	29.341
	CRR073302	Leaf 3	25.629
	CRR073303	Juvenile bud 1	26.514
	CRR073304	Juvenile bud 2	14.828
	CRR073305	Juvenile bud 3	29.846
	CRR073306	Third green 1	5.211
	CRR073307	Third green 2	3.697
	CRR073308	Third green 3	6.186
	CRR073309	Second white 1	6.539
	CRR073310	Second white 2	9.741
	CRR073311	Second white 3	9.505
	CRR073312	Silver flowering 1	7.597
	CRR073313	Silver flowering 2	6.271
	CRR073314	Silver flowering 3	5.694
	CRR073315	Gold flowering 1	10.377
	CRR073316	Gold flowering 2	21.839
	CRR073317	Gold flowering 3	10.745
	CRR073318	Tawny withering 1	24.417
	CRR073319	Tawny withering 2	25.021
	CRR073320	Tawny withering 3	23.771