Gene detail

Detail information of GWHGAAZE021732

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071327.1	4.7898E-133	PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
COG	YP_004696643.1	9E-11	serine/threonine protein kinase
Swissprot	tr\|Q41328\|PTI1_SOLLC	4E-128	Pto-interacting protein 1
trEMBL	tr\|A0A067K7T6\|A0A067K7T6_JATCU	1E-128	Uncharacterized protein {ECO:0000313\|EMBL:KDP28325.1}
TAIR10	AT3G17410.1	4E-106	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60462424	60476145	-
GWHAAZE00000006	mRNA	60462424	60476145	-
GWHAAZE00000006	exon	60475665	60476145	-
GWHAAZE00000006	exon	60475093	60475296	-
GWHAAZE00000006	exon	60467065	60467431	-
GWHAAZE00000006	exon	60466395	60466522	-
GWHAAZE00000006	exon	60465978	60466300	-
GWHAAZE00000006	exon	60465027	60465153	-
GWHAAZE00000006	exon	60463711	60463972	-
GWHAAZE00000006	exon	60462955	60463207	-
GWHAAZE00000006	exon	60462752	60462841	-
GWHAAZE00000006	exon	60462424	60462573	-
GWHAAZE00000006	CDS	60475665	60476145	-
GWHAAZE00000006	CDS	60475093	60475296	-
GWHAAZE00000006	CDS	60467065	60467431	-
GWHAAZE00000006	CDS	60466395	60466522	-
GWHAAZE00000006	CDS	60465978	60466300	-
GWHAAZE00000006	CDS	60465027	60465153	-
GWHAAZE00000006	CDS	60463711	60463972	-
GWHAAZE00000006	CDS	60462955	60463207	-
GWHAAZE00000006	CDS	60462752	60462841	-
GWHAAZE00000006	CDS	60462424	60462573	-

Transcript Sequence
>GWHTAAZE021756 ATGCGGTCGGTTCAAGAATCAAATCCCGGTAAGAAATTTAATCCATCCTCTTCATTGCTGCCAGAAAATCTATCCCGTCGGTTTTCGCTTGATGAGATCTTAACAGCCACAAATGATTTCGACGATTCGTTGGTCATTGGCCAAGGGGGGTTTGCAAAGGTTTACAAAGGGGAAATTGATAATGGGATTCTTACTGTTGCCATAAAGCGAATGAAGCCTATGTTCAAAGAAGGCGCCCCTGAGTTTCGTTCAGAGATTTTGATGGTGTCCAAATTTCGACACAGTCATCTAGTCTCTCTCATTGGTTACTGTGAGAGCGAAAATGAAATGATCCTTGTATACGAATATATGGCCCGTGGGACTCTAGAAGATAATTTGCATAAAATTGGTACAAGTGGAAATAACAATCTTCCTCTAAGTTGGGTCCAACGCCTTAAAATATGTATTGGTGCTGCTCGGGGGCTAGAGTACCTTCATACTGTCAAATTGTACCACGTGAGTTTGTTGGCATTTGTGAAAGTTGCTGACCGATGCTTGCATGGTCGTCCAAAAGAACGCCCTACAATGAATGAGGTTCTGACTGATCTTGAGCTTGCTTTGAATTTGCAAGCAAGCACAAATGTTGCCAGTGGGTTTGCAGAAAAGTTACGGTTGTTGTTTTCAGTCACACCTCGGCCAATATCAGGAATAGTTGAGAGAATTATTGATCTGAAGTTGAAGTGGGAAATCTTTCCGGATAGTGTGTCCGCATATTTGAAAATTGTGGACAAATGCTTGCATGATTGTCCCAAAGAACACCCTACAATGACTGAGGTGGTATCTGAGCTTGAGTTGGGTCTGACAGTACAAGAGAGAAGGGATTATTCTATGGCAGAGGAGGTTATTTTTAATGAAACTGAGGCTTCTGACAGCCAAGAGATTGTGGATTCTTCTACAGTGGTTGTCGATTCTTCTACAAAAGAGAAGGTGCTTATCAATGTTGGTAGTAGTGAGCATCAAGACAAGAAAGTTGGCACTGCTTTCCATTTTGGGAGAACAAAATTCACAAAGAAGGAGAAGAAGGTGAACGATAATGTCGTAAGTAGAGTTATCACAAAGGGCAGTTCCGATGCCCTACAGGGAAGGAATACGTCCTTACACTATGCAATTTCTGTGGGTTTGACCCATCATGCAACTATTGTTCATCATGCCACAGAGGTTGCACCAACTGACACATTGACTGCACCAATTGATACTGAGGTTGTGCCAAAGAGCACAGGTACTACATCAATTGGTACAGTGGCTGCACCAAATGACAGGCACGCTATAAATATTGAGCCTATTGCCGTCCCTTCTATTCAGCTGGATGAGTTGAGGGAAATAACAGACAACTTTGGTACAAAGTCTTTGATCTATGAGGGGACTTACAGAAGATTATACAAGGGTGTCTTGAAAAGTGGGCGGTTCTCATGCATCAAAAAGTTAGATCTCAATGAGCTTTCAGATCAAGCATTTTTAACACAGGTTTCGATGGCATCAAAACTTAAGCATGAAAACGTGGTTGAGCTACTTGGTTATTGTGTGGATGGTGTCCTACGTGTCCTTGCCTATGAGTATGCTTCAAATGGATCTCTTCATGACATTCTTCACGGACGAAAAGGTATCAAAGGTGCGCAGCCAGGTCCTGTTCTATCATGGTCCCAAAGATTTAAAATTGCTGTTGGAGCAGCAAAAGGACTTGAATACTTGCATGAAAAGTCAGATCCCCATATTGTCCATTGCTATGTTAGGTCCTCCAATGTGTTACTGTTTGAGGATGATGTTGCAAAAATAGCAGATATGGACTTGTCAAATCCAACCCCTAACATGAAAAAGCATCTTTCTTCCACTAATGGTGGTTATTGTGCTCCTGAGCAGACCCCAGCCCAGCAAAATTTTGAATTTGATGTTAGAGACTATGGCATCCCTGTTGGCCATCCACCATTGCATACTAGACGGTATGCAAATACTGGAAAACTTGGTCCTCCAACACGTTTTAGTTGGTATTCAAGTACTGGAAAAAGGAGTTTAAAGAGTGACGTTTACAGCTTTGGCGTGGTCCTCTTGGAACTATTGACCGGTCGTAAACCTTTGGATTTTACAAAGAGACATGGACAACAGAGTCTGGCAACTCCAAAACTCCGACAAGATAATAAAGTGAAGCAGTGTATTGACCCAAAATTGAATGGAGAATTCCATTTCAAACAAGCTGAAAAGATGGCTGCGATTGCAGCCTTGTGCGTGCAATATGAAGCTGAAAGCCGTCCGACCATGAACAGTGTAGTTAAAGCCCTCCAGCCTCTGCTGAATACTTTACAAGAACCTAGTCGTGAGGCACCACACTTGTCAATCACACACCCTCGTTAA

Network for GWHGAAZE021732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	45	168	1.10E-20
PF07714.18	PK_Tyr_Ser-Thr	465	635	6.00E-21
PF07714.18	PK_Tyr_Ser-Thr	679	771	5.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.593
	SRR3591706	second leaf	0.290
	SRR3591707	mature leaf	0.853
	SRR3591708	Shoot apex	0.688
	SRR3591709	Stem	1.230
	SRR3591710	White floral bud	0.844
	SRR3591711	White flower	1.286
	SRR3591712	Green floral bud	1.369
	SRR3591713	Yellow flower	0.958
SRP173429	SRR8316895	Juvenile bud stage	0.808
	SRR8316896	Juvenile bud stage	1.146
	SRR8316897	Juvenile bud stage	0.069
	SRR8316894	Third green stage	0.725
	SRR8316900	Third green stage	0.835
	SRR8316901	Third green stage	0.788
	SRR8316898	Complete white stage	0.199
	SRR8316899	Complete white stage	1.031
	SRR8316903	Complete white stage	0.385
	SRR8316902	Silver flowering stage	0.295
	SRR8316904	Silver flowering stage	0.358
	SRR8316905	Silver flowering stage	0.192
	SRR8316906	Gold flowering stage	0.415
	SRR8316907	Gold flowering stage	0.600
	SRR8316908	Gold flowering stage	0.190
SRP132670	SRR6706286	Control	0.652
	SRR6706287	Light intensity 50%	0.920
	SRR6706288	Light intensity 20%	0.911
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.966
	CNS0095593	Slightly white alabastrum(diploid) 2	0.774
	CNS0095594	Slightly white alabastrum(diploid) 3	0.927
	CNS0095595	Whole white alabastrum(diploid) 2	0.581
	CNS0095596	Whole white alabastrum(diploid) 3	0.532
	CNS0095597	Whole white alabastrum(diploid) 4	0.566
	CNS0095598	Silvery flower (diploied) 1	0.827
	CNS0095599	Silvery flower (diploied) 2	0.421
	CNS0095600	Silvery flower (diploied) 3	0.245
	CNS0095601	Golden flower (diploid) 1	0.805
	CNS0095602	Golden flower (diploid) 2	0.315
	CNS0095603	Golden flower (diploid) 3	0.383
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.897
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.230
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.048
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.651
	CNS0095610	Silvery flower (tetraploid) 1	0.719
	CNS0095611	Silvery flower (tetraploid) 2	0.562
	CNS0095612	Silvery flower (tetraploid) 3	0.883
	CNS0095613	Golden flower (tetraploid) 1	0.368
	CNS0095614	Golden flower (tetraploid) 2	0.573
	CNS0095615	Golden flower (tetraploid) 3	0.343
CRA001975	CRR073297	Stem 1	1.435
	CRR073298	Stem 2	1.027
	CRR073299	Stem 3	0.433
	CRR073300	Leaf 1	0.794
	CRR073301	Leaf 2	1.040
	CRR073302	Leaf 3	0.492
	CRR073303	Juvenile bud 1	0.890
	CRR073304	Juvenile bud 2	0.074
	CRR073305	Juvenile bud 3	0.279
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.040
	CRR073308	Third green 3	0.105
	CRR073309	Second white 1	0.025
	CRR073310	Second white 2	0.019
	CRR073311	Second white 3	0.110
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.211
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.212
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.435
	CRR073319	Tawny withering 2	0.156
	CRR073320	Tawny withering 3	0.441