Gene detail

Detail information of GWHGAAZE021721

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594840.1	3.6389E-124	PREDICTED: proteasome subunit beta type-2-A [Nicotiana tomentosiformis]
COG	YP_008431900.1	6E-15	proteasome subunit beta
Swissprot	tr\|O23714\|PSB2A_ARATH	9E-120	Proteasome subunit beta type-2-A
trEMBL	tr\|B7FH05\|B7FH05_MEDTR	2E-124	Uncharacterized protein {ECO:0000313\|EMBL:AFK39895.1}
TAIR10	AT3G22630.1	5E-95	20S proteasome beta subunit D1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60210107	60215326	+
GWHAAZE00000006	mRNA	60210107	60215326	+
GWHAAZE00000006	exon	60210107	60210264	+
GWHAAZE00000006	exon	60211246	60211369	+
GWHAAZE00000006	exon	60213640	60213735	+
GWHAAZE00000006	exon	60214781	60215326	+
GWHAAZE00000006	CDS	60210107	60210264	+
GWHAAZE00000006	CDS	60211246	60211369	+
GWHAAZE00000006	CDS	60213640	60213735	+
GWHAAZE00000006	CDS	60214781	60215113	+
GWHAAZE00000006	three_prime_UTR	60215114	60215326	+

Transcript Sequence
>GWHTAAZE021745 ATGGAGTGTGTATTCGGACTAGTTGGCAAGGATTTCGCACTGGTGGTGGCGGACACATCGGCGGTTCACAGTATACTGGTTCACAAATCCAACGAAGACAAGATCATGATTCTCGATTCTCACAAGCTCATGGGCGCTAGCGGCGAACCCGGTGACAGAGCTCAATTCACGGAGTATATACAGAAGAATGTGGCTTTGTATCAGTTCCGCAATGGCATTCCGCTGACGACTGCTGCTGCAGCAAATTTCACCCGGGGTGAGCTGGCTACTGCGTTACGAAAGGTTGGTGCTTGGTTTGATGAACATGGTTATAATAATGGTGTAGTACTATACAATGGAACTTCGTGTCAGTTCAAACCTCAAAGGGGTAGTAGAAAGAACCCGTATTCCGTGAATATCATACTTGCTGGCTACGACGAGGAAACAGGCCCTTCTCTATACTATCTTGATTACATTGCTACCCTTCACAAGGTTAACAATACAGCTTTTGGTTACGGATCCTATTTTTCACTCTCCATGATGGATAGATACTACCGCAGCGACATGTCAGTGGAAGAAGCCATCGATTTGGTCGATAAGTGCATCATTGAGATACGGTCCAGACTGGTTGTTGCCCCATCAAACTTTGTAATCAAAATTGTTGACAAAGACGGAGCTAGGGAATATGCTTGGCGTGAAACTGTCAATGATGCCCAAGTTTCTGCGGCGTAGATCTCTTTTTTTTCCTCTGAATGGTTCGACTTAGAAATGGTACATGACCGAGAAACTCTTTTAATATTTAATGTGCCTTTGGTTTGATAGTATGTTAGACTTGTTATGGTATGGGAAAATTCTTGCAGTTTATTGTCCATAAATGAGTTTGGAGCTTTGAAATTAAAACCCCAGTTTTCCTTCTTTTTCTTCTGATCTATCATTACCTTACAA

Network for GWHGAAZE021721

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	3	91	3.00E-15
PF00227.27	Proteasome	124	214	4.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02734	PSMB2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.900
	SRR3591706	second leaf	4.008
	SRR3591707	mature leaf	3.791
	SRR3591708	Shoot apex	4.615
	SRR3591709	Stem	10.377
	SRR3591710	White floral bud	14.823
	SRR3591711	White flower	34.976
	SRR3591712	Green floral bud	21.681
	SRR3591713	Yellow flower	26.117
SRP173429	SRR8316895	Juvenile bud stage	10.813
	SRR8316896	Juvenile bud stage	16.543
	SRR8316897	Juvenile bud stage	5.057
	SRR8316894	Third green stage	4.731
	SRR8316900	Third green stage	18.230
	SRR8316901	Third green stage	18.854
	SRR8316898	Complete white stage	6.491
	SRR8316899	Complete white stage	20.436
	SRR8316903	Complete white stage	6.106
	SRR8316902	Silver flowering stage	10.419
	SRR8316904	Silver flowering stage	9.577
	SRR8316905	Silver flowering stage	4.648
	SRR8316906	Gold flowering stage	33.835
	SRR8316907	Gold flowering stage	26.071
	SRR8316908	Gold flowering stage	29.374
SRP132670	SRR6706286	Control	18.252
	SRR6706287	Light intensity 50%	17.665
	SRR6706288	Light intensity 20%	20.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.020
	CNS0095593	Slightly white alabastrum(diploid) 2	27.384
	CNS0095594	Slightly white alabastrum(diploid) 3	24.568
	CNS0095595	Whole white alabastrum(diploid) 2	22.397
	CNS0095596	Whole white alabastrum(diploid) 3	23.742
	CNS0095597	Whole white alabastrum(diploid) 4	20.155
	CNS0095598	Silvery flower (diploied) 1	13.487
	CNS0095599	Silvery flower (diploied) 2	14.966
	CNS0095600	Silvery flower (diploied) 3	29.092
	CNS0095601	Golden flower (diploid) 1	15.698
	CNS0095602	Golden flower (diploid) 2	20.038
	CNS0095603	Golden flower (diploid) 3	21.201
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.488
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.662
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.942
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.840
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.177
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.950
	CNS0095610	Silvery flower (tetraploid) 1	37.559
	CNS0095611	Silvery flower (tetraploid) 2	31.401
	CNS0095612	Silvery flower (tetraploid) 3	28.237
	CNS0095613	Golden flower (tetraploid) 1	38.028
	CNS0095614	Golden flower (tetraploid) 2	35.634
	CNS0095615	Golden flower (tetraploid) 3	44.909
CRA001975	CRR073297	Stem 1	15.896
	CRR073298	Stem 2	12.572
	CRR073299	Stem 3	12.387
	CRR073300	Leaf 1	20.992
	CRR073301	Leaf 2	17.812
	CRR073302	Leaf 3	22.164
	CRR073303	Juvenile bud 1	28.002
	CRR073304	Juvenile bud 2	36.152
	CRR073305	Juvenile bud 3	16.094
	CRR073306	Third green 1	14.717
	CRR073307	Third green 2	10.032
	CRR073308	Third green 3	13.667
	CRR073309	Second white 1	25.839
	CRR073310	Second white 2	36.500
	CRR073311	Second white 3	20.813
	CRR073312	Silver flowering 1	12.062
	CRR073313	Silver flowering 2	8.322
	CRR073314	Silver flowering 3	15.099
	CRR073315	Gold flowering 1	4.885
	CRR073316	Gold flowering 2	6.421
	CRR073317	Gold flowering 3	5.051
	CRR073318	Tawny withering 1	10.170
	CRR073319	Tawny withering 2	10.046
	CRR073320	Tawny withering 3	13.355