Gene detail

Detail information of GWHGAAZE021702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277936.1	0	PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal [Vitis vinifera]
COG	YP_005846047.1	3E-87	Long-chain acyl-CoA synthetase
Swissprot	tr\|Q8LKS5\|LACS7_ARATH	0	Long chain acyl-CoA synthetase 7, peroxisomal
trEMBL	tr\|D7T6V1\|D7T6V1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26222.3}
TAIR10	AT5G27600.1	0	long-chain acyl-CoA synthetase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59847955	59865625	+
GWHAAZE00000006	mRNA	59847955	59865625	+
GWHAAZE00000006	exon	59847955	59847991	+
GWHAAZE00000006	exon	59848087	59848161	+
GWHAAZE00000006	exon	59856674	59856734	+
GWHAAZE00000006	exon	59856818	59856895	+
GWHAAZE00000006	exon	59857031	59857102	+
GWHAAZE00000006	exon	59858033	59858106	+
GWHAAZE00000006	exon	59858200	59858276	+
GWHAAZE00000006	exon	59858764	59858808	+
GWHAAZE00000006	exon	59858939	59859025	+
GWHAAZE00000006	exon	59859662	59859751	+
GWHAAZE00000006	exon	59859894	59859973	+
GWHAAZE00000006	exon	59860091	59860184	+
GWHAAZE00000006	exon	59861302	59861390	+
GWHAAZE00000006	exon	59861497	59861585	+
GWHAAZE00000006	exon	59862148	59862277	+
GWHAAZE00000006	exon	59862385	59862503	+
GWHAAZE00000006	exon	59862846	59862969	+
GWHAAZE00000006	exon	59863114	59863200	+
GWHAAZE00000006	exon	59863996	59864099	+
GWHAAZE00000006	exon	59864189	59864274	+
GWHAAZE00000006	exon	59864950	59865036	+
GWHAAZE00000006	exon	59865512	59865625	+
GWHAAZE00000006	CDS	59847955	59847991	+
GWHAAZE00000006	CDS	59848087	59848161	+
GWHAAZE00000006	CDS	59856674	59856734	+
GWHAAZE00000006	CDS	59856818	59856895	+
GWHAAZE00000006	CDS	59857031	59857102	+
GWHAAZE00000006	CDS	59858033	59858106	+
GWHAAZE00000006	CDS	59858200	59858276	+
GWHAAZE00000006	CDS	59858764	59858808	+
GWHAAZE00000006	CDS	59858939	59859025	+
GWHAAZE00000006	CDS	59859662	59859751	+
GWHAAZE00000006	CDS	59859894	59859973	+
GWHAAZE00000006	CDS	59860091	59860184	+
GWHAAZE00000006	CDS	59861302	59861390	+
GWHAAZE00000006	CDS	59861497	59861585	+
GWHAAZE00000006	CDS	59862148	59862277	+
GWHAAZE00000006	CDS	59862385	59862503	+
GWHAAZE00000006	CDS	59862846	59862969	+
GWHAAZE00000006	CDS	59863114	59863200	+
GWHAAZE00000006	CDS	59863996	59864099	+
GWHAAZE00000006	CDS	59864189	59864274	+
GWHAAZE00000006	CDS	59864950	59865036	+
GWHAAZE00000006	CDS	59865512	59865610	+
GWHAAZE00000006	three_prime_UTR	59865611	59865625	+

Transcript Sequence
>GWHTAAZE021726 ATGCTTCAACTTGACGGGTACAATGCTAGCGTTGAAGGGAGAAAGGTTCTTGGGGACAGTTATAATGGTGGTGTCAAATCAAGTCTTTGTCGTATTGGCAGCAGGATTATAGAGCAGGGTTACAGTGTTGTGCTTCCAGAGAAATTGCAGACGGGAAAGTGGAATGTATACAGATCTGCACGTTCTCCTTTGAAGCTTGTTAGTAGATTCCCCGATCATCCTGAAATCAGTACCTTGCATGATAACTTTGTGCGCTCAGTTGAGACTTTCAGAGATTACAAGTACTTGGGCACACGCATTCGGGTGGATGGAACAGTTGGAGAACCGGAGTGGGCAATAGTTGATCATGCCTGCTCTGCCTATTCATACGTGTCGGTTCCTTTATATGATACTCTTGGACCAGACGCCGTCAAGTATATTGTGAATCACGCTATTCTACAAGCCATATTTTGTGTGCCTCAAACACTAGATATTTTGCTGAGCTTCTTGTCTGAAATTCCTTCAGTGCGTCTAATAGTGGTGGTTGGAGGGATAGATGAACATATGCCATCTCTTCCATCAACAACTGGAGTTGAGGTTATCTCGTATTCAAAAATACTTAGTCAGGGCCAGAGCAACCTTCAACCTTTTTGCCCACCAAAACCTGAGGATGTTGCTACAATATGCTACACTAGTGGTACAACCGGGACACCAAAGGGAGCTGTCCTGTCCCATGGAAACCTCATCGCGAATATTGCTGGTGCAACTGTTAGTACCAAATTGTTTCCTTCAGATGTTTACATATCTTATCTTCCTTTGGCGCACATATATGAGCGGGCTAACCAGGTCATGTTGGTATATTTTGGAGCTGCATCGGGATTCTACCAAGGAGACAATTTGAAACTAATGGATGATATGGGTGCTCTAAGACCCACTGTATTCTGCAGTGTTCCTCGGTTGTATAATCGAATATATGCTGGCATTATGAATGCTGTAAAGACATCTGGTACCCTGAGGGAAAGGCTGTTTAATGCTGCTTTCAATGCTAAGAAAAACGCGATTCTGAGTGGTAAAAATCCATCTCCAATGTGGGACAGATTAGTATTTAATAAAATAAAGGAAAAGCTTGGAGGACGAGTTCGGTATATGATTTCTGGTGCATCTCCCTTATCTCCTGATGTGATGGACTTTCTGAGGGTGTGCTTTGGTTGTTGGGTTTTAGAAGGATATGGCATGACTGAGAGTTCTTGTGTTATAAGCTCTATGGATGAGGAGGATAACTTATCTGGTCATGTTGGCTCTCCTAATCCTGCTTGCGAGATTAAGCTTGTAGATGTTCCAGAAATGAACTATACATCTGAGGATAAGCCTTCTCCACGAGGCGAAATATGTGTAAGGGGCCCCATTGTGTTCCAAGGCTACTATAAAGATGAAGTCCAAACGAGAGAAGCAGTCGATGACGATGGATGGCTTCATACTGGAGACATAGGGTTATGGTTACCTGGAGGCCGCTTAAAGATAATTGATAGGAAGAAGAACATTTTCAAATTGGCACAGGGAGAGTACATAGCTCCTGAAAAAATCGAAAACGTATATGCTAAGTGCAAGTTTGCCGCGCAGTGCTTCGTCTATGGTGACAGTCTGAATTCATCTTTGGTTGCTATTGTGTCTGTGGACCCTGATGTGTTGAAATCCTGGGCCGCAGCTGAAGGCATTAAGTATGAAGATTTAAATCAACTATGCAATGACCCGAGAGCCAGGGCTGCCGTCTTGGCTGACATGGATGCCCTTGGAAGAGCAGCTCAGGTGAAGAGACCTCAAGCAAAGGCATATTTTCAGAAAGCAATAGCTAACATGTACGCAGAACTCTCAAACTCGGATCCTTCCCTGAAGAAAAATTTGTGACAAACAGTGGAGAAA

Network for GWHGAAZE021702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.29	AMP-binding	109	510	6.60E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01897	ACSL, fadD	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Fatty acid degradation	map00071
		Peroxisome	map04146
		Ferroptosis	map04216
		Quorum sensing	map02024
		Adipocytokine signaling pathway	map04920
		PPAR signaling pathway	map03320
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.000
	SRR3591706	second leaf	17.801
	SRR3591707	mature leaf	26.234
	SRR3591708	Shoot apex	23.664
	SRR3591709	Stem	46.731
	SRR3591710	White floral bud	51.849
	SRR3591711	White flower	65.485
	SRR3591712	Green floral bud	21.983
	SRR3591713	Yellow flower	120.791
SRP173429	SRR8316895	Juvenile bud stage	17.188
	SRR8316896	Juvenile bud stage	24.846
	SRR8316897	Juvenile bud stage	11.601
	SRR8316894	Third green stage	8.214
	SRR8316900	Third green stage	25.303
	SRR8316901	Third green stage	23.004
	SRR8316898	Complete white stage	17.592
	SRR8316899	Complete white stage	29.500
	SRR8316903	Complete white stage	28.416
	SRR8316902	Silver flowering stage	23.446
	SRR8316904	Silver flowering stage	32.870
	SRR8316905	Silver flowering stage	18.051
	SRR8316906	Gold flowering stage	85.076
	SRR8316907	Gold flowering stage	76.014
	SRR8316908	Gold flowering stage	121.664
SRP132670	SRR6706286	Control	20.411
	SRR6706287	Light intensity 50%	20.362
	SRR6706288	Light intensity 20%	22.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.775
	CNS0095593	Slightly white alabastrum(diploid) 2	22.882
	CNS0095594	Slightly white alabastrum(diploid) 3	18.944
	CNS0095595	Whole white alabastrum(diploid) 2	16.317
	CNS0095596	Whole white alabastrum(diploid) 3	16.182
	CNS0095597	Whole white alabastrum(diploid) 4	15.503
	CNS0095598	Silvery flower (diploied) 1	29.111
	CNS0095599	Silvery flower (diploied) 2	24.258
	CNS0095600	Silvery flower (diploied) 3	50.708
	CNS0095601	Golden flower (diploid) 1	28.524
	CNS0095602	Golden flower (diploid) 2	57.715
	CNS0095603	Golden flower (diploid) 3	57.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.068
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.936
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.628
	CNS0095610	Silvery flower (tetraploid) 1	80.841
	CNS0095611	Silvery flower (tetraploid) 2	62.714
	CNS0095612	Silvery flower (tetraploid) 3	83.338
	CNS0095613	Golden flower (tetraploid) 1	95.591
	CNS0095614	Golden flower (tetraploid) 2	107.520
	CNS0095615	Golden flower (tetraploid) 3	104.356
CRA001975	CRR073297	Stem 1	20.996
	CRR073298	Stem 2	19.561
	CRR073299	Stem 3	14.890
	CRR073300	Leaf 1	25.220
	CRR073301	Leaf 2	23.784
	CRR073302	Leaf 3	17.763
	CRR073303	Juvenile bud 1	20.220
	CRR073304	Juvenile bud 2	17.439
	CRR073305	Juvenile bud 3	22.009
	CRR073306	Third green 1	28.664
	CRR073307	Third green 2	20.345
	CRR073308	Third green 3	25.359
	CRR073309	Second white 1	75.561
	CRR073310	Second white 2	83.822
	CRR073311	Second white 3	122.223
	CRR073312	Silver flowering 1	145.341
	CRR073313	Silver flowering 2	96.533
	CRR073314	Silver flowering 3	129.260
	CRR073315	Gold flowering 1	12.163
	CRR073316	Gold flowering 2	20.176
	CRR073317	Gold flowering 3	11.793
	CRR073318	Tawny withering 1	13.131
	CRR073319	Tawny withering 2	16.227
	CRR073320	Tawny withering 3	8.797