Gene detail

Detail information of GWHGAAZE021692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN73875.1	0	hypothetical protein VITISV_039541 [Vitis vinifera]
COG	YP_008340.1	7E-25	hypothetical protein pc1341
Swissprot	tr\|Q9LE82\|RAGP1_ARATH	0	RAN GTPase-activating protein 1
trEMBL	tr\|A5AWW1\|A5AWW1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73875.1}
TAIR10	AT3G63130.2	3E-172	RAN GTPase activating protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59713692	59715185	-
GWHAAZE00000006	mRNA	59713692	59715185	-
GWHAAZE00000006	exon	59714943	59715185	-
GWHAAZE00000006	exon	59713692	59714897	-
GWHAAZE00000006	CDS	59714943	59715185	-
GWHAAZE00000006	CDS	59713692	59714897	-

Transcript Sequence
>GWHTAAZE021716 ATGCTTGTGAAGCGAATGACTAAAAATCTTTCTTGCCCAACAATATTCACTCGTAAGTATGGAATTCTAAGTGAGGAAGAGGCCGAGGAAAATGCCAAACAAATTGAAGAAGCGGCCTTTGCCACTGCAGATCAACACTACGAAAACGAGCCTGATGGTGATGGAAGTTCCGCAGTTCAGCTTTATGCTAGAGAAGGCAGTAAGCTTATCCTCGAAGTTCTCAAAAGGGGTCCTAGGACCGAGACTGAGGACAAGAAGGTAGAGAAACCCGAGGCAGTTACTCCGTCCAATGAGACCTTTTTTGACTTGTCAAAAGGCAAGCGAGCCTTCATCGAGGCAGAGGAGGCGCAGGATCTTTTGCAGCCATTAATGGAGCAGGGTAATTCTTATACAAAGATATGTTTCAGCAATAGAAGCTTTGGGTTGGGTGCGGCCCAGGTTGCGGGACCTGTATTAGCGTCCCTCAAGGATCAATTGATGGAAGTTGATTTGTCTGACTTTATTGCGGGCCGATCTGAGGCCGAAGCTATTGACGTGATGAACGTATTCTCCAACGCGCTGGAAGGCTGTGTTTTGAAGACTCTAAATCTCTCGAACAACGCGCTAGGCGAGAAGGGCGTTAGGGCATTCAGTTCACTTCTTCAGTCGCAGGGTAGCTTAGAAGAACTTTATTTAATGAATGATGGAATATCTGAAGAAGCTGCAAGAGCTGTTTGCGAGTTGATTCCATCAACAGAGAAGCTTAAGGTTCTTCACTTTCATAATAACATGACAGGAGATGAAGGGGCTGTTGCTATTTCTCAAGTCATTGAACGATCTCCATTATTGGAGGATTTTCGATGTTCATCTACTAGGGTTGGTAATGAAGGAGGAATTGCCTTGGCCAAAGCTCTTGGGATTTGTGCTCATTTGAAGAAGCTCGATTTACGAGACAACATGTTTGGGGTTGAAGCTGGCGTTCTTCTAGCCAAATCTCTTGCCAGACATGCAAATTTGACAGAGATTTATCTGAGCTACCTAAATTTGGAAGACGAGGGGGCAATAGCTATAGCCAACGTTCTCAAGGAAAGCGCACCATCACTTCAAGTCTTGGAAATGGCCGGAAATGAAATAACAGTTGAAGCAGCTCCTAGTTTGGCTGCTTGTATAGTGTCTAAGCCTTCTCTCACCAAGCTCGTCTTGGCTGAGAATGAACTTAAGGACGATGGGGCAGTCCAAATCAGCAAGGCTTTGGAAGAAGGCCATGATGAATTGAAGGAAGTTGATATGAGCGCGAACCAGCTAAGGAGGGTTGGGGCTAGGGTTTTGGCTCAGGCCGTGGTGCATAAGCCGGCATTTACTTTGCTGAACCTTAACGGGAACTTCATTTCTGATGAAGGAATTGACGAGTTGAAAGGGATATTTAAGAAATCTCCAGATATGCTCGGGCCCTTGGACGAAAATGACCCT

Network for GWHGAAZE021692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13943.7	WPP	1	82	5.30E-25
PF13516.7	LRR_6	192	211	0.061
PF13516.7	LRR_6	301	320	1.5
PF13516.7	LRR_6	330	351	0.074
PF13516.7	LRR_6	386	408	0.15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14319	RANGAP1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.508
	SRR3591706	second leaf	17.663
	SRR3591707	mature leaf	13.127
	SRR3591708	Shoot apex	54.673
	SRR3591709	Stem	22.009
	SRR3591710	White floral bud	28.130
	SRR3591711	White flower	25.580
	SRR3591712	Green floral bud	50.027
	SRR3591713	Yellow flower	17.497
SRP173429	SRR8316895	Juvenile bud stage	24.285
	SRR8316896	Juvenile bud stage	30.696
	SRR8316897	Juvenile bud stage	14.253
	SRR8316894	Third green stage	17.104
	SRR8316900	Third green stage	46.097
	SRR8316901	Third green stage	42.337
	SRR8316898	Complete white stage	19.419
	SRR8316899	Complete white stage	56.357
	SRR8316903	Complete white stage	35.002
	SRR8316902	Silver flowering stage	10.849
	SRR8316904	Silver flowering stage	13.152
	SRR8316905	Silver flowering stage	5.020
	SRR8316906	Gold flowering stage	12.732
	SRR8316907	Gold flowering stage	16.967
	SRR8316908	Gold flowering stage	15.671
SRP132670	SRR6706286	Control	55.857
	SRR6706287	Light intensity 50%	61.349
	SRR6706288	Light intensity 20%	69.482
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.269
	CNS0095593	Slightly white alabastrum(diploid) 2	20.914
	CNS0095594	Slightly white alabastrum(diploid) 3	18.122
	CNS0095595	Whole white alabastrum(diploid) 2	20.194
	CNS0095596	Whole white alabastrum(diploid) 3	20.276
	CNS0095597	Whole white alabastrum(diploid) 4	16.532
	CNS0095598	Silvery flower (diploied) 1	9.856
	CNS0095599	Silvery flower (diploied) 2	11.816
	CNS0095600	Silvery flower (diploied) 3	45.624
	CNS0095601	Golden flower (diploid) 1	8.497
	CNS0095602	Golden flower (diploid) 2	28.058
	CNS0095603	Golden flower (diploid) 3	25.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.027
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.863
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.451
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.426
	CNS0095610	Silvery flower (tetraploid) 1	33.763
	CNS0095611	Silvery flower (tetraploid) 2	28.899
	CNS0095612	Silvery flower (tetraploid) 3	48.729
	CNS0095613	Golden flower (tetraploid) 1	14.322
	CNS0095614	Golden flower (tetraploid) 2	26.761
	CNS0095615	Golden flower (tetraploid) 3	16.200
CRA001975	CRR073297	Stem 1	95.556
	CRR073298	Stem 2	84.655
	CRR073299	Stem 3	114.123
	CRR073300	Leaf 1	94.163
	CRR073301	Leaf 2	77.878
	CRR073302	Leaf 3	98.265
	CRR073303	Juvenile bud 1	89.841
	CRR073304	Juvenile bud 2	92.358
	CRR073305	Juvenile bud 3	107.984
	CRR073306	Third green 1	33.101
	CRR073307	Third green 2	29.783
	CRR073308	Third green 3	43.324
	CRR073309	Second white 1	37.426
	CRR073310	Second white 2	24.633
	CRR073311	Second white 3	18.586
	CRR073312	Silver flowering 1	12.905
	CRR073313	Silver flowering 2	23.803
	CRR073314	Silver flowering 3	15.795
	CRR073315	Gold flowering 1	19.208
	CRR073316	Gold flowering 2	22.621
	CRR073317	Gold flowering 3	36.381
	CRR073318	Tawny withering 1	52.087
	CRR073319	Tawny withering 2	34.855
	CRR073320	Tawny withering 3	44.949