Gene detail

Detail information of GWHGAAZE021684

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018056.1	2.35169E-71	Kinase superfamily protein [Theobroma cacao]
COG	NP_923611.1	0.00000004	serine/threonine kinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	4E-58	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|M0TXJ5\|M0TXJ5_MUSAM	8E-72	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P04860_001}
TAIR10	AT1G76360.1	6E-51	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59504792	59519230	+
GWHAAZE00000006	mRNA	59504792	59519230	+
GWHAAZE00000006	exon	59504792	59505407	+
GWHAAZE00000006	exon	59505624	59506271	+
GWHAAZE00000006	exon	59506959	59507209	+
GWHAAZE00000006	exon	59507462	59507519	+
GWHAAZE00000006	exon	59514158	59514385	+
GWHAAZE00000006	exon	59518842	59519230	+
GWHAAZE00000006	CDS	59504792	59505407	+
GWHAAZE00000006	CDS	59505624	59506271	+
GWHAAZE00000006	CDS	59506959	59507209	+
GWHAAZE00000006	CDS	59507462	59507519	+
GWHAAZE00000006	CDS	59514158	59514385	+
GWHAAZE00000006	CDS	59518842	59519230	+

Transcript Sequence
>GWHTAAZE021708 ATGTTTCAACTTCGGTTGCCGATTCCGGCTCTTTCCTGTTTTCTTTTTCTCTGTAATTCAATTTTAACCTTCGCCGATAGCTTCGGTGAAATTGCCGTTGATAACTGCCGTTTATTTGACAATAATCTGGAACCACGAACACCAAAATCATCATTACTAGCTTTTGGCCGCGTTTACATAGTTGTAAATGTGGTTATAATTGTTATGGTTTTACTGAATGTAATTGTTTATAAGCTCCGGCAGCTTCAAGAAGAAAACTCAGGTGATAAATTGAGCAAATTGTGTTCAGGAAGACTATGTCGTCGGTTTTCACTTGCTGAGATCTTATCGGCAACCAATGATTTTGACGACTCTTTGATCATAGGGCAAGGCGGGTATGGGAAGGTTTACAGAGGGGTTATCCAGAGTGTGGGGTGCGATGTTGCCATAAAGCGTTGGGATCCAATGTCCAAACAAGGAGCCCCTCATTTTTTGAGAGAGATTGAGATGTTGTCCAATTTTCGACACTGTCATATTATTTCTATGCTTGGTTACTGTGACAGCTTCGATGAAATGATCCTGGTTTACAAATATATGGCTCATGGAAGTCTAGATAACTTTTTTTGCGGCAGAAACAGCATTAGAAAAAAGTTCGGGTATCTGGATCAAGATGGTGTCAACACCGTGGTTGTAGGTACAGTCGGCTATATAGATCCAGATTATATTCGGAACAATAAATTGACAAGTAAAGCCGACATATACTCCTTTGGGGTTGTATTATTTGAAGTGCTGAGTGGGAGGGCTGCAGTTGATAGGGGATTTGAGGAGAAACAACAGAATCTGGCTAGATGGGCTAAACATTGCACCAAAGAAGGAACAGTTGACCAGATTATCGACCCTAATTTGAGGGGGCAAATCTTACCAAATTGTTTGTCAGCATTTGTGCAAGTTGCAAACCAATGCTTGCATAATGCTCCCAAAAGACGCCCTACGGCAGCTGAGGTTGTGGTCCAGCTTCAGCTTGCACTAGCATTGCAAGAGGGAGGAGGGGGTTCTTCTGTACTTGAGGAGGAGGTTTCTGTTGCTGGCCAGACTTATGGCAGTAAAGAGCCTTTGGATTCTTTTAGAACACGGGAGGATAAAAATGTAGATATTACTGAGCGCAGTGACAAAAAAATTGATGGGTTTATATACAACATGCAGACTTTTGTAAAGCCTGCTAAGAAAATAAAGGTCACACAAAAGGCGCGTGTTGTCCTTTCCTTTACAGCTAGGTCGTTATCAGGTATTTTCCAGCAAGGGCGTTTAAGTGAGCAAGTTGTGACTACAAATTTAAAAAGGTTCAAGTTAGCTGAATTGAAAATCGCAACTCGTAACTTCAGTCCAGATAGGCAGCTGGGCAAGGGATATTTTCAAAGGGTTTTCACTGGGTGGCTCAATGAGAAGACATACACCCCTTCAAAAATTGGCAGTGGAATGGCTGTCGCTGTTAAGAAATTTAATGTTAACAGCCCACAGAGTTTTGAAGCATGGAAGAATAACCTCAAGCATGAGACTGAATCGGTACAACTTGGAAGCAGATCGAGGTTACTAGCTACTGCAAAATATATAACTGTTCCATCTGCAGGAGGTGCAAATCCACTCTCGTGGGATACAAGGCTTAAAATATCGTTAGGAGCAGCGCGAGGCCTTTGTTTCTTGCACAAGACAGAGAACGGAGTCATACACCGCAAGGTTAAGACCTCTAATATATTGCTGGATGGGGTACGTTTAGCTCTTTTAATTCATTTATCGCCTACTTCATGGACCCATTGTGATCAGAGATGTTGGTACGCAAAGAGCGACGTCTACAGCTTTGGAGCGGTATTGCTGGAAATACTAACAGGACAACATGTAAAGGACGAGTTTTGGCACAATGAGGACAACGATGATGATGATTTGGTTGAATGGGCTAGGGTTTTCCTGCCCAATAAAACGAAGTTGAAAAAACTAATAGACCCAAGGCTGGAAAATGACTATCGTTTAGAAGAAGCATTCCAATTAGCTTCACTTATACTTAAATGCCTTGAAAATTTCCCTACAAATAGACCTTCCATAGAACAAGTGTTGGAGTCCCTAGAACAAATCAATGGCATGCACAAGGAGAAATCTGAAGCCCTGCATACTGACACAAATCCCGAAGCAAGTGGTAGAACTCCAATGGACGTGTAA

Network for GWHGAAZE021684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	120	202	4.30E-14
PF00069.26	Pkinase	220	329	5.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.487
	SRR3591706	second leaf	2.534
	SRR3591707	mature leaf	5.709
	SRR3591708	Shoot apex	4.131
	SRR3591709	Stem	3.061
	SRR3591710	White floral bud	2.684
	SRR3591711	White flower	3.539
	SRR3591712	Green floral bud	1.881
	SRR3591713	Yellow flower	5.067
SRP173429	SRR8316895	Juvenile bud stage	1.722
	SRR8316896	Juvenile bud stage	1.571
	SRR8316897	Juvenile bud stage	1.073
	SRR8316894	Third green stage	0.818
	SRR8316900	Third green stage	1.508
	SRR8316901	Third green stage	1.914
	SRR8316898	Complete white stage	0.988
	SRR8316899	Complete white stage	2.672
	SRR8316903	Complete white stage	1.602
	SRR8316902	Silver flowering stage	1.632
	SRR8316904	Silver flowering stage	1.926
	SRR8316905	Silver flowering stage	0.877
	SRR8316906	Gold flowering stage	5.751
	SRR8316907	Gold flowering stage	3.242
	SRR8316908	Gold flowering stage	4.544
SRP132670	SRR6706286	Control	2.338
	SRR6706287	Light intensity 50%	2.126
	SRR6706288	Light intensity 20%	1.781
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.273
	CNS0095593	Slightly white alabastrum(diploid) 2	0.597
	CNS0095594	Slightly white alabastrum(diploid) 3	0.891
	CNS0095595	Whole white alabastrum(diploid) 2	1.306
	CNS0095596	Whole white alabastrum(diploid) 3	0.382
	CNS0095597	Whole white alabastrum(diploid) 4	0.583
	CNS0095598	Silvery flower (diploied) 1	3.113
	CNS0095599	Silvery flower (diploied) 2	1.665
	CNS0095600	Silvery flower (diploied) 3	3.874
	CNS0095601	Golden flower (diploid) 1	2.352
	CNS0095602	Golden flower (diploid) 2	5.662
	CNS0095603	Golden flower (diploid) 3	4.777
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.842
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.628
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.053
	CNS0095610	Silvery flower (tetraploid) 1	3.992
	CNS0095611	Silvery flower (tetraploid) 2	3.615
	CNS0095612	Silvery flower (tetraploid) 3	3.054
	CNS0095613	Golden flower (tetraploid) 1	2.958
	CNS0095614	Golden flower (tetraploid) 2	5.759
	CNS0095615	Golden flower (tetraploid) 3	9.938
CRA001975	CRR073297	Stem 1	1.518
	CRR073298	Stem 2	1.940
	CRR073299	Stem 3	0.393
	CRR073300	Leaf 1	1.058
	CRR073301	Leaf 2	0.948
	CRR073302	Leaf 3	0.847
	CRR073303	Juvenile bud 1	0.388
	CRR073304	Juvenile bud 2	0.398
	CRR073305	Juvenile bud 3	0.724
	CRR073306	Third green 1	0.353
	CRR073307	Third green 2	0.220
	CRR073308	Third green 3	0.626
	CRR073309	Second white 1	1.139
	CRR073310	Second white 2	1.213
	CRR073311	Second white 3	2.132
	CRR073312	Silver flowering 1	3.373
	CRR073313	Silver flowering 2	3.414
	CRR073314	Silver flowering 3	4.000
	CRR073315	Gold flowering 1	1.201
	CRR073316	Gold flowering 2	1.297
	CRR073317	Gold flowering 3	0.884
	CRR073318	Tawny withering 1	1.421
	CRR073319	Tawny withering 2	0.818
	CRR073320	Tawny withering 3	1.161