Gene detail

Detail information of GWHGAAZE021682

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792374.1	2.4164E-121	PREDICTED: probable serine/threonine-protein kinase NAK isoform X2 [Nicotiana sylvestris]
COG	YP_226417.1	6E-20	serine/threonine protein kinase
Swissprot	tr\|P27450\|CX32_ARATH	4E-101	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	2E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	3E-89	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59473651	59481009	+
GWHAAZE00000006	mRNA	59473651	59481009	+
GWHAAZE00000006	exon	59473651	59473660	+
GWHAAZE00000006	exon	59474450	59474594	+
GWHAAZE00000006	exon	59474670	59474812	+
GWHAAZE00000006	exon	59475077	59475361	+
GWHAAZE00000006	exon	59475656	59475739	+
GWHAAZE00000006	exon	59475833	59476333	+
GWHAAZE00000006	exon	59476994	59477244	+
GWHAAZE00000006	exon	59478745	59478880	+
GWHAAZE00000006	exon	59478975	59479111	+
GWHAAZE00000006	exon	59479208	59479331	+
GWHAAZE00000006	exon	59480621	59481009	+
GWHAAZE00000006	CDS	59473651	59473660	+
GWHAAZE00000006	CDS	59474450	59474594	+
GWHAAZE00000006	CDS	59474670	59474812	+
GWHAAZE00000006	CDS	59475077	59475361	+
GWHAAZE00000006	CDS	59475656	59475739	+
GWHAAZE00000006	CDS	59475833	59476333	+
GWHAAZE00000006	CDS	59476994	59477244	+
GWHAAZE00000006	CDS	59478745	59478880	+
GWHAAZE00000006	CDS	59478975	59479111	+
GWHAAZE00000006	CDS	59479208	59479331	+
GWHAAZE00000006	CDS	59480621	59481009	+

Transcript Sequence
>GWHTAAZE021706 ATGTTGTTAGAGCGGATCCATGATGTTCCTTCAGTGGTGCCTCCTTCCCAGAGCCCTCCTCCTACCTTGTGCGTCTTATGCGATGATGGAGCCTTTTGTGAGGCCTTTGATAAGGCAGCAGTGGGATGTGTGATATTTTGTTACATCAGGTTCAGCAAGAGACCAGAAATTTCGTGGCAGCAGCAGCCGCAGCTTAAATGCGGTGGGGCCGATTCGAGGAGCAGCAAGTCAAGCGCCACCGCACGCGGCTCCTTTCGTCAACTAAATCTTCCTTCGTCACCACCAATAAGTAATTCAGTTGTTTATAAGCTCCGGCAGCTTCAAGATGCAAACTCCGCGGGCGATAATTTGAATGAATTGTTTTCATTACGGCATTGCCGCAGGTTTTCACTTGCTGAGATTTTATTGGCTACCAATCATTTTGACGATTCTTTATTCTTAGGGGAAGGCGGGTTTGGAAAGGTTTACAAAGGGTTTATCGACAATGGGGGACGTACTGTTGCCATAAAGCGTTGTCGTTTGTCCAGGCAAGGGTCCCCCGAGTTTAAGACAGAGATTGAGATGCTGACCAGTTTTAGACATTCCCCAAAAGGCACCCATGTTAGCACTGGCATTAGAGAAAAGTTTGGGTATGATTATCAAGATGGGGTCAGCACCAGGCTTGTGGTATTATGTGGAAGACCTGCAGTGGATTCGACACTTCAAGAAGAAGAAAGGGGTCTGGCTGCATGGGCTGCGCATTGCATAAGCAAAGGAATGATTGACCAGATAATTGACCCCAATTTGAAGGGGCAAATCTTACCAAATTGTTTGTCAGCATTTGTGCAAATTGCAAACCAATGCGTGCATCATGCTCCCAAAAAGCGCCCCACTATGGCCGAGGTTGTGGTGCAGCTTCAGCTTGTACTAGCATTGCAGGAGAGAGGGGATTCTTCCACACTTGAGGAGGAGGTATTTACTTCTGGTCAAACTAAAGACAGAAAAGAGCTTGCGTATTCTCATATACCACGAGAAGTTAAAAATGCCGAGCACCTTGACAAGAAAATTGATGGGTTTATAAACATGCGTGACACAAACAACATGCAGGCTTTTGTAAAGCCTACTAAGAGAATAAAGGTCATGCAGAAGGCGCGCATTTTCTTTTCAGTCACAGCTAGATCGATATCAGGTAAATTTCAGCAAGTGCGTTTGAGTGAGCAAACTGTGACTACAAATTTGAAAAGGTTCAAGTTTGCTGAATTGAAACTGGCAACTCGTAACTTCAGTCCAGATCTGCAGCTGAGCAAGGGATATTTTCAAACGGTTTTCATTGGGTGGCTCAATGAGAAGACATACACCCCTTCAAAAATAGGCATTGGAATGGCCGTTGCTGTTAAGAAATTTAATGTTAACAATCCACAGAATTTTGAAGCATGGAAGTCGGAGGTACAACTCTTTGGAAAATTTAATCATGCCAACCTCGTCAAGCTCTTGGGATATTGTTGGGAAGATAAGGAACTCTTCATTGTTTATGAGTACATGCAAAAGGGAAGCTTAGATAAGCATCTTTTCAAAGAAGGTGGAAATCCATTTTCATGGGATACACGGCTTAAAATATCGATAGGAGCAGCTCGAGGCCTTTGTTTCTTGCACAAGACAGAGAGTGGAGTTATACACCGCAAGGTTAAAACCTCAAATATATTGCTGGATGGGGATTTTAATGCAAAGCTATCGGATTTTGGATTGGCGAAATCAGGTTCCTTAGAAGAGCATACAGGCCTTACAGCAAGTATTGCGGGGGCTTATGGTTTTTTAGCCCCCGAGTACATAGCCACTGGATGTTGGTACGCAAAGAGTGATGTCTATAGCTTTGGCGCGGTATTGCTGGAACTACTGACAGGACGACATGTAAGGGACGAGTTTTGGCAAAATGAGGAAGATGCTGATGATTTGGTTGAGTGGGCTAGGGTTTTCCTGCCCAATAAAACAGAGCTGAAAAAACTGATAGACGCAAGGCTGAAAAATGACTATCCTTTGGAAGAGGCATTCGAGTTAGCTTCACTCATACTTGTATGCCTTGAAACTTTCCCTAGAGACAGACCTACCATTGAACAAGTGTTGGAGTCTTTAGAACAAATTAACGGCGTCAATGTGAAACACAAGAAGTCCGAAGCTGTGCAGACTGACATTCCCGAATCAAGTGGTACAACTCCAATGGAGGAGTAA

Network for GWHGAAZE021682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	426	703	7.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.353
	SRR3591706	second leaf	4.024
	SRR3591707	mature leaf	3.927
	SRR3591708	Shoot apex	10.800
	SRR3591709	Stem	9.149
	SRR3591710	White floral bud	2.658
	SRR3591711	White flower	3.776
	SRR3591712	Green floral bud	3.012
	SRR3591713	Yellow flower	5.207
SRP173429	SRR8316895	Juvenile bud stage	13.460
	SRR8316896	Juvenile bud stage	14.812
	SRR8316897	Juvenile bud stage	9.147
	SRR8316894	Third green stage	3.223
	SRR8316900	Third green stage	6.080
	SRR8316901	Third green stage	6.017
	SRR8316898	Complete white stage	0.922
	SRR8316899	Complete white stage	6.781
	SRR8316903	Complete white stage	2.091
	SRR8316902	Silver flowering stage	2.356
	SRR8316904	Silver flowering stage	3.654
	SRR8316905	Silver flowering stage	1.154
	SRR8316906	Gold flowering stage	7.548
	SRR8316907	Gold flowering stage	7.165
	SRR8316908	Gold flowering stage	9.240
SRP132670	SRR6706286	Control	5.235
	SRR6706287	Light intensity 50%	5.339
	SRR6706288	Light intensity 20%	5.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.235
	CNS0095593	Slightly white alabastrum(diploid) 2	11.155
	CNS0095594	Slightly white alabastrum(diploid) 3	11.958
	CNS0095595	Whole white alabastrum(diploid) 2	8.440
	CNS0095596	Whole white alabastrum(diploid) 3	7.314
	CNS0095597	Whole white alabastrum(diploid) 4	7.942
	CNS0095598	Silvery flower (diploied) 1	9.155
	CNS0095599	Silvery flower (diploied) 2	8.743
	CNS0095600	Silvery flower (diploied) 3	8.044
	CNS0095601	Golden flower (diploid) 1	13.175
	CNS0095602	Golden flower (diploid) 2	13.737
	CNS0095603	Golden flower (diploid) 3	13.119
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.696
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.234
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.282
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.209
	CNS0095610	Silvery flower (tetraploid) 1	8.333
	CNS0095611	Silvery flower (tetraploid) 2	6.608
	CNS0095612	Silvery flower (tetraploid) 3	3.082
	CNS0095613	Golden flower (tetraploid) 1	6.402
	CNS0095614	Golden flower (tetraploid) 2	7.777
	CNS0095615	Golden flower (tetraploid) 3	10.215
CRA001975	CRR073297	Stem 1	5.873
	CRR073298	Stem 2	4.998
	CRR073299	Stem 3	2.613
	CRR073300	Leaf 1	4.525
	CRR073301	Leaf 2	4.991
	CRR073302	Leaf 3	2.598
	CRR073303	Juvenile bud 1	1.208
	CRR073304	Juvenile bud 2	0.927
	CRR073305	Juvenile bud 3	1.320
	CRR073306	Third green 1	0.417
	CRR073307	Third green 2	0.365
	CRR073308	Third green 3	0.658
	CRR073309	Second white 1	0.563
	CRR073310	Second white 2	0.633
	CRR073311	Second white 3	0.942
	CRR073312	Silver flowering 1	1.826
	CRR073313	Silver flowering 2	1.159
	CRR073314	Silver flowering 3	1.946
	CRR073315	Gold flowering 1	1.336
	CRR073316	Gold flowering 2	2.849
	CRR073317	Gold flowering 3	0.742
	CRR073318	Tawny withering 1	4.140
	CRR073319	Tawny withering 2	7.515
	CRR073320	Tawny withering 3	5.494