Gene detail

Detail information of GWHGAAZE021679

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273571.1	0	PREDICTED: crooked neck-like protein 1 [Vitis vinifera]
Swissprot	tr\|Q8GUP1\|CTF77_ARATH	0.0000003	Cleavage stimulation factor subunit 77 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|A5BWC0\|A5BWC0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81550.1}
TAIR10	AT5G41770.1	0	crooked neck protein, putative / cell cycle protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59429563	59432027	-
GWHAAZE00000006	mRNA	59429563	59432027	-
GWHAAZE00000006	exon	59431621	59432027	-
GWHAAZE00000006	exon	59429563	59431345	-
GWHAAZE00000006	five_prime_UTR	59431971	59432027	-
GWHAAZE00000006	CDS	59431621	59431970	-
GWHAAZE00000006	CDS	59429563	59431345	-

Transcript Sequence
>GWHTAAZE021703 CAATCTTCACCAAAACCCTATTTTATTTTCACATAAATCTCTTTCTGATCGATAATAATGGCGGACGAGTCCAATAAAGATTCAGATCGATCTCCGGGCTATCGAACTCGCAAAGAAACCGAGGTGAAGAAGCTCCATCGTCAAACTAGGGTTAAGAACAAAACTCCGGCACCGGTTCAGATCACTGCAGAACAGATTATCCGGGAAGCGCGAGAAGGGCAAGAGGCTGAGATTAGACGACCACCGAAGAAGCAGAAGAAAATAAATGATGCCACAGAATTGGCTGATTATCGATTGCATAGGAGAAAAGAATTTGAAGACCTAATTAGGAGAGATAAATCGAACAAGCGTGTGTGGGTGAAGTATGCACAATGGGAAGAATCGCAAACGGACTTCAGTCGAGCCAGGTCAGTGTGGGAAAGAGCTATGCTTGTCAATTCGAGGGATCACACAATGTGGTTAAATTATGCGCATGCAGCGATGGAGAATAAGTTTATTAACCATGCTCGTAATATTTTGGATAGGGCTGTTTCTTTGTTGCCTAGAATTGATCAATTATGGTTTAAGTATATTCATATGGAGGAAATGCTGGGTGATGTTACTGTTGCTAGGCAAATATTCGAGAGATGGATGAGTTGGGAACCGGATCAACAAGCTTGGCTTTCATATATAAAATTCGAGCTTAGGTACAATGAAATTACGAGAGCAAGGGGTATATTTGAAAGATTTGTTGAGTGCCAGCCGAAAGTTGGGTCTTGGATTCGTTTTGCTGAATTCGAGATGAAGAACAGGGAGATTGGTAGGGTGAGGAATTGTTACGAGCGGGCTGTTGATTTGTTGGCTGATGATGAAGAGGCTGAGCAGTTGTTTGTGGCATTTGCTGAGTTTGAAGAGAAATGTAAGGAGACTGTGAGGGCAAGGGGCATTTACAAGTTTGCTCTTGATCATGTACCAAAGAGTCGGGCAGAGAATTTGTATAGGAAGTTTGTGGCATTTGAGAAGCAGTATGGTGATAGAGTGGGAATGGAGGATGCAATTGTGCGGAAGAGAAGGTTTCAATGCGAGAAGGAGGTGAGAAAGAATCCGTTGAATTACAATTCTTGGTTTGATTACATTCGATTGGAAGAGAGTAGTGGAAGTAAAGGGAGGATCAGGGAGGTTTATGAAAGAGCAATTTCGAATGTACCTCCAGCTGCAGAGAAGCGCTATTGGCAGCGATATATTTATTTATGGATAAATTATTCTTTGTATGAAGAGCTTGATGCGCAGGACATGGAGCGTACCAGAGATGTCTATAGTGAGTGTCTCAAGCTGATTCCTCATAGGAAATTTTCATTTGCAAAGATTTGGTTATTGGCTGCTCAGTTTGAGATAAGGCAATTAAATCTGAGGGGTGCCCGCTTAATCCTTGGAAATGCAATTGGAAAGGCTCCTAAAGATAAGATATTTAAGAAGTACATTGCAATTGAGCTTCAACTTGGTAACATAGATCGTTGCCGAAAGCTGTATAATAAATATTTGAAGTGGTCACCAGGAAACTATTATGCTTGTAGCAAGTATGCCGAGTTGGAGAGATCCTTGCACGAAACTGAGCTAGCTAGAGCCATCTTTGAACAAGCAATTGCCCAACCTGCATTGGATATGCCAGAATTGTTGTGGAAGGCGTACATCGATTTTGAGATATCAGAGGGTGAATTTGAAAGAACTAGACAGCTTTATGAGAGGCTTTTGGACCGCACAAAGCACTTGAAGGTGTGGATTAGTTACGCAAAGTTTGAAGCATCTGCTATGGAAAAGGATTACCAAGGTTCAGACTTGTCCGAAGATGATGTTCAAGAATCTCTTCATGAACAGAAGAAACAATGCCTTCTGCGTGCTAGAAGGGTTTTCGAAAGTGCTGTAAACTACCTCAGAACATCAGCCCCAGAGCTAAAGGAGGAAAGAGCAATGCTTTTGGAGGAGTGGCTCAACTTAGAGAGCAGCTTTGGCGAGCTTGGTAATGTTAGTGTGGTCCTTGCTAAGCTCCCAAAGAAACTCAAGAAGAGACAGCAAATAGAAACCGAGGATGGCCCTGCCAGGTATGAGGAGTACATAGAGTACGTCTTCCCAGAAGAAACGCAGGCCCCAAATCTCAAGATCTTGGAAGTTGCATACAAGTGGAAGAAGCAGGAGAAGACCGAAGTGGATTAG

Network for GWHGAAZE021679

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02184.17	HAT	213	241	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12869	CRN, CRNKL1, CLF1, SYF3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.448
	SRR3591706	second leaf	0.789
	SRR3591707	mature leaf	0.380
	SRR3591708	Shoot apex	0.311
	SRR3591709	Stem	1.288
	SRR3591710	White floral bud	2.521
	SRR3591711	White flower	1.838
	SRR3591712	Green floral bud	2.996
	SRR3591713	Yellow flower	2.202
SRP173429	SRR8316895	Juvenile bud stage	2.477
	SRR8316896	Juvenile bud stage	5.457
	SRR8316897	Juvenile bud stage	1.693
	SRR8316894	Third green stage	2.053
	SRR8316900	Third green stage	5.433
	SRR8316901	Third green stage	4.177
	SRR8316898	Complete white stage	1.070
	SRR8316899	Complete white stage	3.695
	SRR8316903	Complete white stage	3.030
	SRR8316902	Silver flowering stage	3.558
	SRR8316904	Silver flowering stage	5.176
	SRR8316905	Silver flowering stage	2.669
	SRR8316906	Gold flowering stage	12.382
	SRR8316907	Gold flowering stage	9.770
	SRR8316908	Gold flowering stage	9.648
SRP132670	SRR6706286	Control	3.960
	SRR6706287	Light intensity 50%	3.724
	SRR6706288	Light intensity 20%	4.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.361
	CNS0095593	Slightly white alabastrum(diploid) 2	2.655
	CNS0095594	Slightly white alabastrum(diploid) 3	4.134
	CNS0095595	Whole white alabastrum(diploid) 2	3.053
	CNS0095596	Whole white alabastrum(diploid) 3	3.936
	CNS0095597	Whole white alabastrum(diploid) 4	2.684
	CNS0095598	Silvery flower (diploied) 1	1.332
	CNS0095599	Silvery flower (diploied) 2	1.412
	CNS0095600	Silvery flower (diploied) 3	4.957
	CNS0095601	Golden flower (diploid) 1	1.564
	CNS0095602	Golden flower (diploid) 2	4.310
	CNS0095603	Golden flower (diploid) 3	3.916
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.216
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.748
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.535
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.925
	CNS0095610	Silvery flower (tetraploid) 1	8.524
	CNS0095611	Silvery flower (tetraploid) 2	8.486
	CNS0095612	Silvery flower (tetraploid) 3	6.635
	CNS0095613	Golden flower (tetraploid) 1	7.347
	CNS0095614	Golden flower (tetraploid) 2	8.060
	CNS0095615	Golden flower (tetraploid) 3	7.697
CRA001975	CRR073297	Stem 1	3.373
	CRR073298	Stem 2	2.980
	CRR073299	Stem 3	3.739
	CRR073300	Leaf 1	3.582
	CRR073301	Leaf 2	2.369
	CRR073302	Leaf 3	2.453
	CRR073303	Juvenile bud 1	3.038
	CRR073304	Juvenile bud 2	1.601
	CRR073305	Juvenile bud 3	4.236
	CRR073306	Third green 1	1.745
	CRR073307	Third green 2	0.673
	CRR073308	Third green 3	1.230
	CRR073309	Second white 1	4.518
	CRR073310	Second white 2	5.027
	CRR073311	Second white 3	4.175
	CRR073312	Silver flowering 1	2.035
	CRR073313	Silver flowering 2	0.908
	CRR073314	Silver flowering 3	2.380
	CRR073315	Gold flowering 1	0.132
	CRR073316	Gold flowering 2	0.540
	CRR073317	Gold flowering 3	0.287
	CRR073318	Tawny withering 1	0.865
	CRR073319	Tawny withering 2	1.144
	CRR073320	Tawny withering 3	1.510