Gene detail

Detail information of GWHGAAZE021675

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07284.1	9.6319E-149	unnamed protein product [Coffea canephora]
COG	YP_007201433.1	1E-24	protein kinase family protein
Swissprot	tr\|P46573\|APK1B_ARATH	6E-129	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|A0A068UGG6\|A0A068UGG6_COFCA	4E-149	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07284.1}
TAIR10	AT2G17220.2	1E-116	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59371526	59380481	-
GWHAAZE00000006	mRNA	59371526	59380481	-
GWHAAZE00000006	exon	59380227	59380481	-
GWHAAZE00000006	exon	59378303	59379337	-
GWHAAZE00000006	exon	59377909	59378068	-
GWHAAZE00000006	exon	59375283	59375360	-
GWHAAZE00000006	exon	59375074	59375208	-
GWHAAZE00000006	exon	59374608	59374984	-
GWHAAZE00000006	exon	59373377	59373512	-
GWHAAZE00000006	exon	59373142	59373278	-
GWHAAZE00000006	exon	59372899	59373025	-
GWHAAZE00000006	exon	59371526	59371863	-
GWHAAZE00000006	CDS	59380227	59380481	-
GWHAAZE00000006	CDS	59378303	59379337	-
GWHAAZE00000006	CDS	59377909	59378068	-
GWHAAZE00000006	CDS	59375283	59375360	-
GWHAAZE00000006	CDS	59375074	59375208	-
GWHAAZE00000006	CDS	59374608	59374984	-
GWHAAZE00000006	CDS	59373377	59373512	-
GWHAAZE00000006	CDS	59373142	59373278	-
GWHAAZE00000006	CDS	59372899	59373025	-
GWHAAZE00000006	CDS	59371526	59371863	-

Transcript Sequence
>GWHTAAZE021699 ATGCGCATATCAATTCTGCCCTCTCAATTCCAGTCAAACTCATCGAAACAATTCCAATTTTATGCAAACTCAATGAACCCAGATCCTGAAATATCCGATTTCGGACAACTTATGGATGATAGTTTGACAAAGACATATTCTTGTTGTGGTGAAGTAGAAAGCGATCATCAAGTGTTCGATGAAATGCCTAAAGGGGGTGTAATTATGCGGGATTCGAAGCTTTCTGGTTACATCAAGAGAAGAAATTGCAAAGAGCCAAGAAGATGGGTATTAGCTTTAGGCCGAGGAAATGCAATTGCCACTGTTTTGATAATCTTCATTACACTCTTGAATGTCATTGTTTACAAGCTCCGGGAGCTTCAAGAATCGAACTCTGGTGAGAAATTAACCGTCTCGTCTTCATTGCAATCGGAGCAACTCTGCCGGCGCTTTTCACTCTCTGAGATTCTGTCCGCTACACACAATTTTGATGAATCGTTGGTCATTGGGCAAGGTGGGTTTGGAAAGGTATATAAAGGGGTTGTCGATAATGGTGCAAATACTGTAGCCGTAAAGAGACTAAATTCCTTGTCCAAGCAAGGAGCACCCGAATTTTGGACCGAAATTTCGATGCTTTCTAAGTATCGACATAGCCATTTAGTCTCTCTGCTTGGTTACTGTGATAATTACTACGAGATGATCCTTGTATATGAATACATGGTCCATGGAACTTTAGCTGATCACTTGCATAAAAATAGTAAGAATGGTTTTGGTGATTCTTGTCTATCTTGGGTTCAACGCCTCAAGATATGTATAGGCGCCGCTCGTGGACTGGATTATCTACACACTGGGACGGGTATCCGACATAGAGTTATACACCGTGATGTGAAGAGCACAAACATTTTGCTGGATGAGAATTGGGCAGCTAAGATTTCGGATTTTGGTATGTCCAAAATCGGTCCAGCAAACCAATCTTGCACTCATATCAGCACCCACGTTAAAGGGACATTTGGGTATGTAGATCCAGAGTATTTTTTGACCCGCAGATTAACAAGGAAATCGGATGTGTACTCTTTTGGGGTTGTATTGCTTGAAGTTCTTTGCGGTAGGCCTGCAGTTGATTCAACTCTACATGAGGACCAACGCGGTCTAGCCCGGTGGGCGCAACACTGCATCAAAGAAGCAAAAGTTGATCAGATTGTCGACCCTAATATTAGGGGACAAATACAGTCAAATTGTTTGTCTGCATTTGTGCAAATAGCGGACCAATGCTTAGATATTCTTCCGAAAAAACGGCCGACAATGGCTGAGCCTTCCATTTTGGCTGATGCAAACGGTACAGAGTCTCCAATGAAGCCTATTAGTGTGGGTGATAAAAACGGAAGCCAGTCTCTTACGAATACCATCAAGCGAATGACATTCACAAAGAAGGTGCAGTTGCTCTTTGTAAACACACGTAGGATGTTTTCGGAGAAAGTCAGGGGGATAAGGAACTGCTGTCGAAAGACCAAAAATGATCTTCCGATCACTGAAAATTCATCCAACCAAGTCCCTGGTGATCCAAAACCATCAAGGGGCAGAATAAGGAAGAATAACATTAACGGAAGCAGTGGGTCGGTAAACAAAAATGGAGGTGGTGTCCAACTTGTGCCTCCAAGTAGGCATCTTGCGACTCCCAGCCCAGATTTGACCAGTTTTTTCAATTTGTCATTTTTTTATTCCTCTACAGTACAAACTGCACGAGGACATAAGGACAACAAAAACGACAATAGCAGCTATGGAAACAGCACAATTCCTAACAAAGACGGAGCTGGTGTATTGCAAGTGCCTCCAAGTGGGCAAATTGTGACTCAAAAATTGAAAGTATTCACGTTTGCTGAATTGAAAATTGCAACAGGGAACTTCAGACTCGACACATTGTTGGGCGAGGGAGGTTTTGGAAAGGTTTTCAAGGGTTGGGTCTCTGAGGAGACATATGCCCCATCGAAACCCGGCATTGGAACACCTATCGCCGTAAAGAAATTATGTATAGAAGGTCTTCAGGGGTCTGAGGAGTGGAAGTCGGAGGTGGAATTCTTGGGAAGATATATGCATCCTAATCTTGTAAAGCTTTTGGGATACTGCATGGAAGACAGGGATCGCCTCATCGTTTACGAGTACATGCAGAAGGGAAGTTTAGATAACTACATTTTCAGAAAAGGTGTACAACCACTGTCATGGGCTACACGGCTTAAAATAGCAACGGGAGCAGCTCGAGGTCTTGCTTTCTTGCACACAGCAGAAAAGCAAGTCATATACCGCGACTTTAAGTCCTCTAATATTTTGCTTGATATGGAATTTAATCCAAAACTTTCAGATTTTGGATTGGCAAAATTTGCTCCACTAGAAGGGAGTGGGTCACACGTTTCAACTCGAATTATGGGCACTTATGGTTATGCAGCTCCAGAGTATGTAGCCACTGGTCATTTATATGTGAAGAGCGATGTCTATGGTTTTGGAGTTGTGTTGCTAGAAATGTTTACAGGCAAGCGGGCGCTTGATGTGAATCGAGCTACTGGAGAGCATAATTTGATAGATTATGCGAAGCCTTTACTACGTGATAAAAGAAAGTTGCGGAGTTTAGTGGACCCAAATCTTGATGCCGATTACCCTCCAAAAGGTGCATTTCAGTTAGCTGCACTAGCACTACGTTGTCTGGAACCTAGCCCTAAAGCCAGGCCGCCGATGACGGAGGTAGTGGAGACTCTAGAACAAATTCAACATTTAAATGACATCCGACAGAAAAAATCCTATAGGTAA

Network for GWHGAAZE021675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	161	430	2.70E-48
PF07714.18	PK_Tyr_Ser-Thr	630	909	5.60E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.616
	SRR3591706	second leaf	0.625
	SRR3591707	mature leaf	1.088
	SRR3591708	Shoot apex	0.771
	SRR3591709	Stem	1.209
	SRR3591710	White floral bud	7.909
	SRR3591711	White flower	13.203
	SRR3591712	Green floral bud	7.084
	SRR3591713	Yellow flower	6.325
SRP173429	SRR8316895	Juvenile bud stage	17.504
	SRR8316896	Juvenile bud stage	18.669
	SRR8316897	Juvenile bud stage	10.030
	SRR8316894	Third green stage	3.576
	SRR8316900	Third green stage	4.894
	SRR8316901	Third green stage	6.973
	SRR8316898	Complete white stage	2.841
	SRR8316899	Complete white stage	13.506
	SRR8316903	Complete white stage	4.473
	SRR8316902	Silver flowering stage	5.049
	SRR8316904	Silver flowering stage	5.920
	SRR8316905	Silver flowering stage	3.038
	SRR8316906	Gold flowering stage	10.247
	SRR8316907	Gold flowering stage	5.957
	SRR8316908	Gold flowering stage	9.964
SRP132670	SRR6706286	Control	8.919
	SRR6706287	Light intensity 50%	8.535
	SRR6706288	Light intensity 20%	8.201
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.009
	CNS0095593	Slightly white alabastrum(diploid) 2	11.097
	CNS0095594	Slightly white alabastrum(diploid) 3	11.314
	CNS0095595	Whole white alabastrum(diploid) 2	10.112
	CNS0095596	Whole white alabastrum(diploid) 3	2.511
	CNS0095597	Whole white alabastrum(diploid) 4	6.305
	CNS0095598	Silvery flower (diploied) 1	16.245
	CNS0095599	Silvery flower (diploied) 2	14.973
	CNS0095600	Silvery flower (diploied) 3	14.599
	CNS0095601	Golden flower (diploid) 1	19.387
	CNS0095602	Golden flower (diploid) 2	20.349
	CNS0095603	Golden flower (diploid) 3	19.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.816
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.738
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.161
	CNS0095610	Silvery flower (tetraploid) 1	8.783
	CNS0095611	Silvery flower (tetraploid) 2	6.166
	CNS0095612	Silvery flower (tetraploid) 3	9.162
	CNS0095613	Golden flower (tetraploid) 1	4.084
	CNS0095614	Golden flower (tetraploid) 2	8.166
	CNS0095615	Golden flower (tetraploid) 3	3.747
CRA001975	CRR073297	Stem 1	15.188
	CRR073298	Stem 2	11.803
	CRR073299	Stem 3	7.702
	CRR073300	Leaf 1	10.838
	CRR073301	Leaf 2	11.551
	CRR073302	Leaf 3	5.960
	CRR073303	Juvenile bud 1	5.108
	CRR073304	Juvenile bud 2	1.763
	CRR073305	Juvenile bud 3	5.996
	CRR073306	Third green 1	7.583
	CRR073307	Third green 2	5.777
	CRR073308	Third green 3	6.941
	CRR073309	Second white 1	6.347
	CRR073310	Second white 2	3.200
	CRR073311	Second white 3	3.160
	CRR073312	Silver flowering 1	4.965
	CRR073313	Silver flowering 2	7.066
	CRR073314	Silver flowering 3	4.811
	CRR073315	Gold flowering 1	4.861
	CRR073316	Gold flowering 2	14.340
	CRR073317	Gold flowering 3	5.973
	CRR073318	Tawny withering 1	21.807
	CRR073319	Tawny withering 2	23.196
	CRR073320	Tawny withering 3	21.181