Gene detail

Detail information of GWHGAAZE021673

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006342141.1	1.1231E-124	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like [Solanum tuberosum]
COG	YP_007206518.1	1E-14	protein kinase family protein
Swissprot	tr\|P43293\|NAK_ARATH	4E-102	Probable serine/threonine-protein kinase NAK
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	3E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	2E-93	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59357049	59368187	-
GWHAAZE00000006	mRNA	59357049	59368187	-
GWHAAZE00000006	exon	59367224	59368187	-
GWHAAZE00000006	exon	59365600	59365734	-
GWHAAZE00000006	exon	59365035	59365357	-
GWHAAZE00000006	exon	59364200	59364225	-
GWHAAZE00000006	exon	59363303	59363480	-
GWHAAZE00000006	exon	59362619	59362742	-
GWHAAZE00000006	exon	59357049	59357368	-
GWHAAZE00000006	CDS	59367224	59368187	-
GWHAAZE00000006	CDS	59365600	59365734	-
GWHAAZE00000006	CDS	59365035	59365357	-
GWHAAZE00000006	CDS	59364200	59364225	-
GWHAAZE00000006	CDS	59363303	59363480	-
GWHAAZE00000006	CDS	59362619	59362742	-
GWHAAZE00000006	CDS	59357049	59357368	-

Transcript Sequence
>GWHTAAZE021697 ATGGTCCACGGAACTCTAGCTGATCATCTGCATAAAAACGGTAAAAACGGTTCTAGCGATTCTCCTCTGTGTTGGGTTCAACGTCTCCAGATATGTATAGGTGCTGCTCGTGGACTGGATTATCTACACACAGGGACGGGTATCCGACATCGAGTCATACATCGCGATGTGAAGAGCACAAACATTTTGTTGGATGAGAATTGGGCAGCTAAGATTTCTGATTTTGGTATGTCCAAAATAGGTCCAGCAAACCAGTCTTGCACTCATATCAGCACCCATGTTAAGGGCACATTTGGGTATGTGGACCCGGATTATTTCTTGACTCGTAGATTAACAAGGAAATCGGATGTGTACTCTTTTGGGGTTGTGTTGCTTGAAGTTCTTTGTGGTAGGCCTGCGGTGGATTCACATCTCCACGAGGACCAAAGGGGTCTAGCTCGCTGGGCTCAGCACTGCATCAAAGAAGGAAAAGTTGATCGGATTGTTGATCCTAATATTAGGGGACAAATACTGTCAAACTGCTTGTCCGCATTTGTGCAAATAGCGGACCAATGCTTAGATATCCTTCCCAAAAAGCGCCCTACTATGGCTGAGGTGGTGGCTTGGCTTGAGTTTGCACTATCGTTGCAACAGAAAAGGGATTCTTCTATACTTGAGGAAGGTATTTTTAATACAGGTGTGATTTTTGATAGCCAAGAGAATGCGGATTCTTCTACGAACCGGGAGATTATCAGTAATGACATTGGTGAGCATGATGGGATTATAGAGTTGGATGATGGAAACGGTGCGGAGTCTCCTATAAAGCGTACCGTTTTGGTTGATGCAAACGGCATGGAGTCTCCTATGCAGCCTACTAGCGTGGGTGATAAAAAAGGAGGCCGGTCTCTTAAAAATCCTGGCAAGCAAATGACATTTTCTAAGAAGCTGCGGTCGCTCTTCTTAAACACGCCTCGGGTGTTATCAGTCCATGGCGATCTAAAACCATCAAGTGATAGGAAAAGCAAGAATAATCTTGCCGGAAACAGTGGGTTGGCAAACAAATATGGAGATATTGTCCAACTAGTGCCTCCAAGTAGGCATATTGCGAATCATAGCCCAGTGGAAAAAGCACAATCAACTGAGAACAACAAAAGCAAAAATTACAGCGGTGGAAACAGCAAATTCCCGGACAAAGATGGATGGCAAGTGCCTCTGAGTGGACAAATTGTGGCGCGAAAATTGAAAATATTCACGTTTGCTGAATTGAAAATCGCAACAAGGAACTTTAGACCAGACACATTTTTGGGCGAGGGAGGTTTTGGGAGGGTTTTCAAAGGTTGGGTCAGTGAGAAGACGTATGCCCCGTCAAAATTCGGTGTCGGAATGCCTATTGCTGTTAAGAAATTTAGTCCAGAAGGTTTTCAGGGGTTTAAAGAGTGGCAGCTTCAAAACTTTTCTCTGCGTCCAAGTGATGAACTAAACTTTGTGAGAAAAATTACTACATATGCAGAAGGCGTAGAACCACTTTCATGGGAAACACGGCTTAAAATAGCAACAGGAGCAGCTCGAGGCCTTTCCTTCTTACACACATCAGAGAAGCAACTCATATACCGCGACTTTAAGTGCTCTAATATATTGTTGGATGAGGACTTCAATCCAAAGCTTTCAGATTTTGGATTGGCAAAATTAGCTCCGATAGAAGGCGATACACATGTTTCAACTATGGTTGTGGGGACTTATGGTTATGCAGCTCCCGAGTATGTAGCCACTGGTCATTTATACGTGAGCAGCGATGTCTACGGTTTTGGAGTTGTTTTGCTGGAAATACTTACAGGCTTTAGGGCGCTTGATCTTAATCGACCCACTGGACAGCATAATCTGGTAGGTTGGGCCAAACCTTTACTAGGCAATAAGAGAAAGTTGAAGAATTTAGTGGACCCACGTCTCGAACAGAACTATCCTCAAGAAGGTGCATTTCGTTTAGCTGTTCTAGCACTACAATGCCTTGCACTTAGTCCAAAAACCAGGCCGTTGACAACAGAAGTAGTGGCCACTTTAGAACAAATTCAAAATTTGACGAAGGAAATATAA

Network for GWHGAAZE021673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	1	201	7.20E-27
PF00069.26	Pkinase	505	676	7.40E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.177
	SRR3591706	second leaf	0.034
	SRR3591707	mature leaf	0.203
	SRR3591708	Shoot apex	0.047
	SRR3591709	Stem	0.237
	SRR3591710	White floral bud	0.962
	SRR3591711	White flower	0.955
	SRR3591712	Green floral bud	1.315
	SRR3591713	Yellow flower	0.510
SRP173429	SRR8316895	Juvenile bud stage	0.079
	SRR8316896	Juvenile bud stage	0.161
	SRR8316897	Juvenile bud stage	0.234
	SRR8316894	Third green stage	0.156
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.017
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.139
SRP132670	SRR6706286	Control	0.008
	SRR6706287	Light intensity 50%	0.022
	SRR6706288	Light intensity 20%	0.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.260
	CNS0095593	Slightly white alabastrum(diploid) 2	0.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.250
	CNS0095595	Whole white alabastrum(diploid) 2	0.113
	CNS0095596	Whole white alabastrum(diploid) 3	0.055
	CNS0095597	Whole white alabastrum(diploid) 4	0.014
	CNS0095598	Silvery flower (diploied) 1	0.005
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.121
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.352
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.104
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.195
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.220
	CNS0095610	Silvery flower (tetraploid) 1	0.446
	CNS0095611	Silvery flower (tetraploid) 2	0.081
	CNS0095612	Silvery flower (tetraploid) 3	0.211
	CNS0095613	Golden flower (tetraploid) 1	0.287
	CNS0095614	Golden flower (tetraploid) 2	0.170
	CNS0095615	Golden flower (tetraploid) 3	0.152
CRA001975	CRR073297	Stem 1	0.040
	CRR073298	Stem 2	0.047
	CRR073299	Stem 3	0.015
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.156
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.025
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000