Gene detail

Detail information of GWHGAAZE021670

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAJ91215.1	2.2073E-123	predicted protein [Hordeum vulgare subsp. vulgare]
COG	YP_004696643.1	7E-26	serine/threonine protein kinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	4E-117	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|F2D7Z4\|F2D7Z4_HORVD	8E-124	Predicted protein {ECO:0000313\|EMBL:BAJ91215.1} (Fragment)
TAIR10	AT3G51550.1	8E-101	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59313387	59314521	-
GWHAAZE00000006	mRNA	59313387	59314521	-
GWHAAZE00000006	exon	59313387	59313409	-
GWHAAZE00000006	exon	59313483	59314521	-
GWHAAZE00000006	CDS	59313483	59314521	-
GWHAAZE00000006	CDS	59313387	59313409	-

Transcript Sequence
>GWHTAAZE021694 ATGCGGCAGCTTCAGGAATCAAATCCCGCATCCTCTTCATTGCCGCAAGAAAATGTATCCCGTCGGTTTTCGCTTGATGAGATCTTGGCGGCCACAAATGATTTTGACGATTCGTTGGTCATTGGCCAAGGGGGGTTCGCAAAGGTTTACAAAGGGGAAATTGATAATGGGGCTCATAGTGTTGCCATAAAGCGAATGAAGCCTATGTTCAAAGAAGGCACCCCTGAGTTTCGGACAGAGATTTTGATGGTGTCCAAATTTCGACACAGTCACCTCGTCTCTCTTATTGGTTACTGTGAGAGCGAAAATGAAATGATTCTTATTTATGAATATATGTCCCGTGGAACTCTAGAAGATAATTTGCATAAAATTGGTACTAGTGGAAATAACAATCTTCCTCTAAGTTGGGTCCAGCGCCTTAAAATATGTATTGGTGCTGCTCGGGGGTTAGAGTACCTTCATACCGGTACTGGCATCCAGCACAGAGTCATTCATCGCGACGTTAAGAGTTCAAACATATTGTTGGATGAGAACTGGGCAGCTAAAATCTCAGATTTTGGGATGTCAAAAATAGGTCCAGCAAACCAGTCGGACACCCATGTTAGCACCCGAGTTGTTGGCACGTTCGGTTATTTGGATCCAGATTACGCTTTCACTGGTAGCCTCACTAGGAAATCCGATGTGTACTCCTTTGGGGTTGTACTATTTGAAGTGTTGTGTGGGAGGCCGGCCTTGGATCGAAGACTCCATGAGGACCAACGGGGTCTAGCTGGGTGGGCGCACTACTGCGTCAAAAAAGGAATTGTTAAGCAAATTATTGATCCCCATTTGAAATCGCAAATCATGCCACGTAGTTTGTTGGCATTTGTGAAAGTTGCTGACCGATGCTTGCATGCTCGTCCAAAAGAACGCCCTACAATGACTGAGGTTCTGGCTGATCTTGAGCTTGCTTTGAATTTACAAGAGAGCACAAAAGTTGCTAGTGGGTTCACAGAAAAATTGCGGCTGTTGTTTTCAGTCACACGTCTGCCAATATCAGACCACCCAGTTTGCTGGACTTAA

Network for GWHGAAZE021670

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	40	313	1.00E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.228
	SRR3591706	second leaf	0.367
	SRR3591707	mature leaf	1.342
	SRR3591708	Shoot apex	0.470
	SRR3591709	Stem	0.278
	SRR3591710	White floral bud	0.803
	SRR3591711	White flower	0.817
	SRR3591712	Green floral bud	0.351
	SRR3591713	Yellow flower	1.084
SRP173429	SRR8316895	Juvenile bud stage	0.277
	SRR8316896	Juvenile bud stage	0.414
	SRR8316897	Juvenile bud stage	0.323
	SRR8316894	Third green stage	0.177
	SRR8316900	Third green stage	0.317
	SRR8316901	Third green stage	0.242
	SRR8316898	Complete white stage	0.095
	SRR8316899	Complete white stage	0.452
	SRR8316903	Complete white stage	0.051
	SRR8316902	Silver flowering stage	0.198
	SRR8316904	Silver flowering stage	0.194
	SRR8316905	Silver flowering stage	0.058
	SRR8316906	Gold flowering stage	0.400
	SRR8316907	Gold flowering stage	0.115
	SRR8316908	Gold flowering stage	0.321
SRP132670	SRR6706286	Control	0.562
	SRR6706287	Light intensity 50%	0.943
	SRR6706288	Light intensity 20%	0.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.832
	CNS0095593	Slightly white alabastrum(diploid) 2	0.078
	CNS0095594	Slightly white alabastrum(diploid) 3	0.081
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.700
	CNS0095599	Silvery flower (diploied) 2	0.239
	CNS0095600	Silvery flower (diploied) 3	0.157
	CNS0095601	Golden flower (diploid) 1	0.267
	CNS0095602	Golden flower (diploid) 2	0.114
	CNS0095603	Golden flower (diploid) 3	0.299
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.195
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.259
	CNS0095610	Silvery flower (tetraploid) 1	0.446
	CNS0095611	Silvery flower (tetraploid) 2	0.246
	CNS0095612	Silvery flower (tetraploid) 3	0.589
	CNS0095613	Golden flower (tetraploid) 1	0.248
	CNS0095614	Golden flower (tetraploid) 2	0.525
	CNS0095615	Golden flower (tetraploid) 3	0.296
CRA001975	CRR073297	Stem 1	0.166
	CRR073298	Stem 2	0.200
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.267
	CRR073301	Leaf 2	0.295
	CRR073302	Leaf 3	1.263
	CRR073303	Juvenile bud 1	0.057
	CRR073304	Juvenile bud 2	0.071
	CRR073305	Juvenile bud 3	0.009
	CRR073306	Third green 1	0.107
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.208
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.682
	CRR073317	Gold flowering 3	0.323
	CRR073318	Tawny withering 1	0.862
	CRR073319	Tawny withering 2	0.313
	CRR073320	Tawny withering 3	0.431