Gene detail

Detail information of GWHGAAZE021666

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071327.1	2.8178E-140	PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
COG	YP_003651948.1	2E-16	PASTA sensor domain-containing serine/threonine protein kinase
Swissprot	tr\|Q41328\|PTI1_SOLLC	4E-138	Pto-interacting protein 1
trEMBL	tr\|W1P4V1\|W1P4V1_AMBTC	1E-137	Uncharacterized protein {ECO:0000313\|EMBL:ERN01990.1}
TAIR10	AT3G17410.1	3E-108	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59222726	59228597	-
GWHAAZE00000006	mRNA	59222726	59228597	-
GWHAAZE00000006	exon	59228439	59228597	-
GWHAAZE00000006	exon	59227527	59228133	-
GWHAAZE00000006	exon	59224877	59225157	-
GWHAAZE00000006	exon	59224660	59224786	-
GWHAAZE00000006	exon	59223904	59224192	-
GWHAAZE00000006	exon	59223260	59223392	-
GWHAAZE00000006	exon	59223043	59223129	-
GWHAAZE00000006	exon	59222726	59222857	-
GWHAAZE00000006	CDS	59228439	59228597	-
GWHAAZE00000006	CDS	59227527	59228133	-
GWHAAZE00000006	CDS	59224877	59225157	-
GWHAAZE00000006	CDS	59224660	59224786	-
GWHAAZE00000006	CDS	59223904	59224192	-
GWHAAZE00000006	CDS	59223260	59223392	-
GWHAAZE00000006	CDS	59223043	59223129	-
GWHAAZE00000006	CDS	59222726	59222857	-

Transcript Sequence
>GWHTAAZE021690 ATGCGTCCACTTCAGGAATCAAATTCTGGTGAGAAATTTAACCCATCCTCTTCATTGCTGCCGGAAAATCTATCCCGTCGGTTTTCGCTTGATGAGATGTTAGCAGCCACAAATGATTTCAATGATTCTCTAATCATTGGCCAAGGGGGGTTCGCAAAGAGTACCTTCATACCGTACTGGTATCCAACACGAGTCATTCATCGCGACATAAAGAGTTCAAATATATTGTTGGATGAGAACTGGGCAGCTAAAATCTCGGATTTTGGGATGTCAAAAATTGGTCCAGCAAACCAGTCAGACACCCATGTTAGCACCAGAGTTGTAGGCACGTTCGGTTATTTGGATCCAGATTATGCTTTCACTGGTAGCCTCACTAGGAAATCCGATGTGTACTCCTTTGGGGTTGTACTATATGAAGTGTTGTGTGGGAGGCCTGCCGTGGATCGAAGACTACCTAAGGACCAATGGGGTTTAGCTGGGTGGGCGCACAACTGCGTCAAGAAAGGAATAGTTAAGCAAATCATTGATCCCAATTTGAAGTCGCAAATCGTGCCGCGTAGTTTGTTGGCATTTGTGAAAATTGCTGACCGATGCTTGCATGCTCGTCCAGAAGAACGCCCTACAATGACTGAGGTGCTGGCTGATCTTGAGCTTGCTTTGAAATTACAGGAGAGCACAAAAGTTGCCAGTGGATTCCATGTTCGGAGAAGGGAATACGCAGAAAAGCTGCGGTTATTGTTTTCAGTCACACCTCGGCCAATATCAGAAGCTGCAACTGGCACAGTGATTGCACCAATTGATACAGAGGCACCAAAAATCACTGTAGCTGCACCAAATGACAATCAGGCTGTGAACATTGAGCCAATTGCCGTCCCTTCTGTTCAGCTAGATGAGTTGAAGGAAATAACAGACAACTTTGGTACAAAAGCTTTGATTTGTGAGGGTACTTGTGGAAAATTATACTATGGTATCTTGAAAACGGGGCAGGCTTCATGCATCAAAAAGTTAGATTCCAATAAATTTCCAGTCCAAGAATTTTTGACCAAGGTTTCTACGGTATCAAGGCTTAAACATGAAAATGTAGTTGAGCTACTTAGTTATTGCATTGATGGTGATCTTTGTATCCTTGCATATGAGTATGCTCTGAATGGATCTCTTCACGACATTCTTCATGGTGTAGGACAAAAAGGTATTGAAAGGCTGCAGACACGTCCAGTTCTATCATGGTCCCAAAGAGTTAAAATTGCTGTTGGAGCATCAGAAGGACTTCAATACTTGCATGAAAAGGCAGCACCCAATATCATCCATCATGGTATCAGGTCCAGCAATGTTTTACTTTTTAATGATGGCATCGCGAAGATAGCGGATACTGAATTTTCAAATCAAGCCCTGGACAAAGAACTGCCATTACCTTCTTATTATACTGTTCGGTTTGTTAGACCGGTTGGTTATCTTGCTCCAGAGTATGCAATGACTGGAGAAATGAGTTCAGAGAGTGACGTCTACAGCTTTGGAGTGGTCCTCTTGGAACTGTTGACCGGGCGTAAAGCTGTTGATCGTACATTGCCAGCTGGACAACAGAGTCTGGTCTTATGGGCAGTTCCAAGACTTGGTGAAGATAAAGTGAAGCAATGTATTGACCCTAGATTGCATGGAAAATACCCCTTCTGGCAAGCTGCAAAGATGGCTGCTATTGCAGCCTTGTGTCTTCAATATGAACCTACTTTCCGTCCGGCAATGAGAATTGTAGTGAAAGCCCTCCGGCCTCTGCTGAATGATTTACCCGGACTTCGCAGTGAAACAAACCATTTGTGA

Network for GWHGAAZE021666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	59	214	1.40E-23
PF07714.18	PK_Tyr_Ser-Thr	311	587	1.00E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.229
	SRR3591706	second leaf	0.250
	SRR3591707	mature leaf	0.308
	SRR3591708	Shoot apex	0.118
	SRR3591709	Stem	0.428
	SRR3591710	White floral bud	0.575
	SRR3591711	White flower	0.852
	SRR3591712	Green floral bud	0.304
	SRR3591713	Yellow flower	1.400
SRP173429	SRR8316895	Juvenile bud stage	0.502
	SRR8316896	Juvenile bud stage	0.541
	SRR8316897	Juvenile bud stage	0.295
	SRR8316894	Third green stage	0.157
	SRR8316900	Third green stage	0.426
	SRR8316901	Third green stage	0.628
	SRR8316898	Complete white stage	0.206
	SRR8316899	Complete white stage	0.466
	SRR8316903	Complete white stage	0.263
	SRR8316902	Silver flowering stage	0.472
	SRR8316904	Silver flowering stage	0.423
	SRR8316905	Silver flowering stage	0.447
	SRR8316906	Gold flowering stage	1.689
	SRR8316907	Gold flowering stage	1.524
	SRR8316908	Gold flowering stage	1.518
SRP132670	SRR6706286	Control	0.335
	SRR6706287	Light intensity 50%	0.313
	SRR6706288	Light intensity 20%	0.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.170
	CNS0095593	Slightly white alabastrum(diploid) 2	0.293
	CNS0095594	Slightly white alabastrum(diploid) 3	0.208
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.118
	CNS0095597	Whole white alabastrum(diploid) 4	0.379
	CNS0095598	Silvery flower (diploied) 1	0.734
	CNS0095599	Silvery flower (diploied) 2	0.177
	CNS0095600	Silvery flower (diploied) 3	0.848
	CNS0095601	Golden flower (diploid) 1	0.335
	CNS0095602	Golden flower (diploid) 2	0.410
	CNS0095603	Golden flower (diploid) 3	0.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.808
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.421
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.067
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.455
	CNS0095610	Silvery flower (tetraploid) 1	1.796
	CNS0095611	Silvery flower (tetraploid) 2	2.484
	CNS0095612	Silvery flower (tetraploid) 3	3.482
	CNS0095613	Golden flower (tetraploid) 1	1.814
	CNS0095614	Golden flower (tetraploid) 2	2.169
	CNS0095615	Golden flower (tetraploid) 3	2.796
CRA001975	CRR073297	Stem 1	0.127
	CRR073298	Stem 2	0.368
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.362
	CRR073301	Leaf 2	0.347
	CRR073302	Leaf 3	0.136
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.192
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.136
	CRR073308	Third green 3	0.190
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.251
	CRR073311	Second white 3	0.268
	CRR073312	Silver flowering 1	0.262
	CRR073313	Silver flowering 2	0.294
	CRR073314	Silver flowering 3	0.088
	CRR073315	Gold flowering 1	0.466
	CRR073316	Gold flowering 2	0.815
	CRR073317	Gold flowering 3	0.074
	CRR073318	Tawny withering 1	0.125
	CRR073319	Tawny withering 2	0.677
	CRR073320	Tawny withering 3	0.148