Gene detail

Detail information of GWHGAAZE021662

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071327.1	4.6311E-134	PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
COG	YP_004092358.1	0.000000003	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q41328\|PTI1_SOLLC	4E-129	Pto-interacting protein 1
trEMBL	tr\|A0A067K7T6\|A0A067K7T6_JATCU	1E-129	Uncharacterized protein {ECO:0000313\|EMBL:KDP28325.1}
TAIR10	AT3G17410.1	1E-105	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59171341	59175755	-
GWHAAZE00000006	mRNA	59171341	59175755	-
GWHAAZE00000006	exon	59175710	59175755	-
GWHAAZE00000006	exon	59175335	59175626	-
GWHAAZE00000006	exon	59174590	59174717	-
GWHAAZE00000006	exon	59174173	59174495	-
GWHAAZE00000006	exon	59173954	59174080	-
GWHAAZE00000006	exon	59172633	59172894	-
GWHAAZE00000006	exon	59171875	59172127	-
GWHAAZE00000006	exon	59171671	59171760	-
GWHAAZE00000006	exon	59171341	59171490	-
GWHAAZE00000006	CDS	59175710	59175755	-
GWHAAZE00000006	CDS	59175335	59175626	-
GWHAAZE00000006	CDS	59174590	59174717	-
GWHAAZE00000006	CDS	59174173	59174495	-
GWHAAZE00000006	CDS	59173954	59174080	-
GWHAAZE00000006	CDS	59172633	59172894	-
GWHAAZE00000006	CDS	59171875	59172127	-
GWHAAZE00000006	CDS	59171671	59171760	-
GWHAAZE00000006	CDS	59171341	59171490	-

Transcript Sequence
>GWHTAAZE021686 ATGCGTATTCCTTTGGGGTTGTACTATTTGAGGTTTTGTGTGCAAGGAATAGTTGAGAGAATTATTGATCTGAAGTTGAAGTGGGAAATCTTTCCGGATAGTGTGTCTGCATATTTGAAAATTGTGGACAAATGCTTGCATGATCGTCCCAAAGAACACCCTACAATGACTGAGGTGGTATCTGAGCTTGAGTTGGGTCTGACAGTGCAAGAGAGAAGGGATTATTCTATGGCAGAGGAGGTTATTTTTAATGACAGTGAGGCTTCTGACAGCCAAGAGATTGTGGATTCTTCTACAGTGCGATTCTTCTACAAAAGAGAAAGTGCTTATCAATGTTGGGAGAAGAAGGTGAAAGATAATGCCGTAAGTAGAGTTATCACAAAGGGTGGTTCCGATGCCCTACAGGGAAGGGATACGTCCTTACACTATGCAATTTCTGTGGGTTTGACCCATCATGCAACTATTGTTCATCATGCCACAGAGGTTGCACCAACTGACACATTGACTGCACCAACTGATACTGAGGTTGTGCCAAAGAGCACAGGTACTACATCAATTGGTACAGTGGCTGCACCAAATGACAGGCACGCTATAAATATTGAGCCTATTGCCGTCCCTTCTATTCAGCTGGATGAGTTGAGGGAAATAACAGACAACTTTGGTACAAAGTCTTTGATCTATGAGGGGACTTACAGAAGATTATACAAGGGTGTCTTGAAAAGTGGGCGGTTCTCATGCATCAAAAAGTTAGATCTCAATGAGCTTTCAGATCAAGCATTTTTAACACAGGTTTCGATGGCATCAAAACTTAAGCATGAAAACGTGGTTGAGCTACTTGGTTATTGTGTGGATGGTGTCCTACGTGTCCTTGCCTATGAGTATGCTTCAAATGGATCTCTTCATGACATTCTTCACGGACGAAAAGGTATCAAAGGTGCGCAGCCAGGTCCCGTTCTATCATGGTCCCAAAGATTTAAAATTGCTGTTGGAGCAGCAAAAGGACTTGAATACTTGCATGAGAAGTCAGATCCCCATATTGTCCATTGCTATGTTAGGTCCTCCAATGTGTTACTGTTTGAGGATGATGTTGCAAAAATAGCAGATATGGATTTGTCAAATCCAACCCCTAACATGAAAAAGCATCTTTCTTCCACTAATGGTGGTTATTGTGCTCCTGAGCAGACCCCAGCCCAGCAAAATTTTGAATTTGATGTTAGAGACTATGGCATCCCTATTGGCCATCCACTGTTGCATAATAGACGGTATGCAAGTACTGGAAAACTTGGTCCTCTGACACGTTTTAGTTGGTATTCAAGTACTGGAAAAAGGAGTTTAAAGAGTGACGTTTACAGCTTTGGCGTGGTCCTCTTGGAACTATTGACCGGTCGTAAACCTTTGGATTTTACAAAGAGACATGGACAACAGAGTCTGGCAACTCCAAAACTCAGACAAGATAATAGAGTGAAGCAGTGTATTGACCCAAAATTGAATGGAGAATTCCATTTCAAACAAGCTGAACAGATGGCTGCGATTGCAGCCTCGTGCGTGCAATATGAAGCTGAAAGCCGTCCGACCATGAACAGTGTAGTTAAAGCCCTCCAGCCTCTGCTGAATACTTTACAAGAACCTAGTCGTGAGGCACCACACTTGTCAATCACACACCCTCGTTAA

Network for GWHGAAZE021662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	227	397	3.10E-21
PF07714.18	PK_Tyr_Ser-Thr	441	533	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.077
	SRR3591706	second leaf	0.044
	SRR3591707	mature leaf	0.105
	SRR3591708	Shoot apex	0.307
	SRR3591709	Stem	0.398
	SRR3591710	White floral bud	0.177
	SRR3591711	White flower	0.261
	SRR3591712	Green floral bud	0.197
	SRR3591713	Yellow flower	0.397
SRP173429	SRR8316895	Juvenile bud stage	0.704
	SRR8316896	Juvenile bud stage	1.511
	SRR8316897	Juvenile bud stage	0.359
	SRR8316894	Third green stage	0.737
	SRR8316900	Third green stage	1.601
	SRR8316901	Third green stage	1.146
	SRR8316898	Complete white stage	0.388
	SRR8316899	Complete white stage	1.465
	SRR8316903	Complete white stage	0.999
	SRR8316902	Silver flowering stage	0.136
	SRR8316904	Silver flowering stage	0.407
	SRR8316905	Silver flowering stage	0.365
	SRR8316906	Gold flowering stage	1.043
	SRR8316907	Gold flowering stage	0.148
	SRR8316908	Gold flowering stage	1.228
SRP132670	SRR6706286	Control	0.769
	SRR6706287	Light intensity 50%	1.229
	SRR6706288	Light intensity 20%	1.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.184
	CNS0095593	Slightly white alabastrum(diploid) 2	0.857
	CNS0095594	Slightly white alabastrum(diploid) 3	1.524
	CNS0095595	Whole white alabastrum(diploid) 2	0.585
	CNS0095596	Whole white alabastrum(diploid) 3	0.682
	CNS0095597	Whole white alabastrum(diploid) 4	0.582
	CNS0095598	Silvery flower (diploied) 1	0.421
	CNS0095599	Silvery flower (diploied) 2	0.734
	CNS0095600	Silvery flower (diploied) 3	0.426
	CNS0095601	Golden flower (diploid) 1	0.535
	CNS0095602	Golden flower (diploid) 2	0.272
	CNS0095603	Golden flower (diploid) 3	0.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.294
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.165
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.386
	CNS0095610	Silvery flower (tetraploid) 1	0.147
	CNS0095611	Silvery flower (tetraploid) 2	0.358
	CNS0095612	Silvery flower (tetraploid) 3	0.341
	CNS0095613	Golden flower (tetraploid) 1	0.091
	CNS0095614	Golden flower (tetraploid) 2	0.112
	CNS0095615	Golden flower (tetraploid) 3	0.051
CRA001975	CRR073297	Stem 1	2.157
	CRR073298	Stem 2	0.882
	CRR073299	Stem 3	0.489
	CRR073300	Leaf 1	1.916
	CRR073301	Leaf 2	1.684
	CRR073302	Leaf 3	0.561
	CRR073303	Juvenile bud 1	0.255
	CRR073304	Juvenile bud 2	0.427
	CRR073305	Juvenile bud 3	0.623
	CRR073306	Third green 1	0.061
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.056
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.046
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.064
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.266
	CRR073316	Gold flowering 2	0.241
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	1.240
	CRR073319	Tawny withering 2	1.316
	CRR073320	Tawny withering 3	0.433