Gene detail

Detail information of GWHGAAZE021649

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071327.1	5.2722E-135	PREDICTED: pto-interacting protein 1 isoform X2 [Sesamum indicum]
COG	YP_003651948.1	6E-18	PASTA sensor domain-containing serine/threonine protein kinase
Swissprot	tr\|Q41328\|PTI1_SOLLC	2E-135	Pto-interacting protein 1
trEMBL	tr\|B2CZJ8\|B2CZJ8_CAPAN	6E-133	Pto kinase interactor 1 {ECO:0000313\|EMBL:ACB30366.1}
TAIR10	AT3G17410.1	4E-106	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58843074	58847623	+
GWHAAZE00000006	mRNA	58843074	58847623	+
GWHAAZE00000006	exon	58843074	58843296	+
GWHAAZE00000006	exon	58843543	58843986	+
GWHAAZE00000006	exon	58845196	58845404	+
GWHAAZE00000006	exon	58845494	58845624	+
GWHAAZE00000006	exon	58846407	58846688	+
GWHAAZE00000006	exon	58847012	58847144	+
GWHAAZE00000006	exon	58847255	58847341	+
GWHAAZE00000006	exon	58847534	58847623	+
GWHAAZE00000006	CDS	58843074	58843296	+
GWHAAZE00000006	CDS	58843543	58843986	+
GWHAAZE00000006	CDS	58845196	58845404	+
GWHAAZE00000006	CDS	58845494	58845624	+
GWHAAZE00000006	CDS	58846407	58846688	+
GWHAAZE00000006	CDS	58847012	58847144	+
GWHAAZE00000006	CDS	58847255	58847341	+
GWHAAZE00000006	CDS	58847534	58847623	+

Transcript Sequence
>GWHTAAZE021673 ATGCTATCCAAATTTCGACACATTCACCTCGTCTCCCTAATTGGATACTGTGACAGCTATGATGAAATGATCCTTGTTTATCAATATATGGCCCGTGGGACTATCGCTGATCATTTGTATAAATTTGGCAGAAAGGACAATAATAATAATGTTCCTCTTTGTTGGGTCCAACGCCTTAAGATATGTATTGGTGCTGCCCGGGGGTTAGACTACCTGCATACTGTGTTGTGTGGGAGGCCTGCTGTGGATTTACGACTTCATGAGGATCAACGAGGTTTAGCCCGGTGGGCGCAATACTGTGTGAAAGAAGGTATAGTTGAGAGAATTATTGATCCCAATTTGAAGTGGGAAATCTTTCCGGATAGTTTGTTGGCATTTGTGAAAGTTGCAAACAAATGCTTGCATGTTCGTCCTACAAAACGCCCTACAATGACTGAGGTGGTGGCTGAGCTAGAGACTGCTCTGACATTCCAAGAGAGAAGGGATTACTCTTTGACAGAGGAGGATATTTTTAATGATGGCGAGGCTTATGACAGCCAAGAGATTGTGGATCCTTCTGCAAAAGAGCATCAGAACAAGAAAAATGGTAGTCCAATCCATGTTGGGAAAACGAACTTCGCGAACAAGTTGCGCCAGTTATTTTTGGTCACTCCTAGGCCAATATCAGTGCATGGGTCTACACATCATGCAACTATTGCTGTTCCTTCTGTTCAGCTAGACGAGTTGAAAGCAATAACAAATAACTTTAGTACAAAGTCTTTGATTTATGTGGGGAAAAATGGAAGATCATTCAATGGTATCTTGAATAGTGGACAGGCTTCATGCATCAAAAAGTTGGATTCCAATAAGCTCAGAAACAAAGAATTTTTAGCGCAGGTTTCTATGATATCAAAGCTTAAACATGAAAATGTGGTTGAGCTACTTAGTTATTGTGTGGATGGTGGTCTCCGTGTCCTTGCATATGAGTATGCCCCGAATGGATCTCTTCATGACATTCTTCATGGCAAGACGAAAAGTGGTATCAAAGGTGTGAAGCCAGATCCAGATCCAGATCCAGTTCTATCATGGTCCCAAAGAGTTAAAATTGCTGTTGGGGCCGCGAAAGGACTTCAATACTTGCATGAAGGGCATTCCAAGCCTATTATCCATCGCAATATTACGTCTAGCAATGTCTTACTTTTCTATGATGATGTTGCAAAGATAGCAGACTTTGAACTGTCAAAAGAAAGCCATGACATAGCAGCATGTCTTTCTTCCACTCTCGGAACCTTTGGTTATCATGCTCCTGAGTATAGAATGACCGGAAAATGGAGTACATCGAGTGACGTTTACAGCTTTGGTGTTGTCCTCTTGGAACTATTGACTGGGCGTGACCCTGTTGATCGTAAATTGCCGCGTGGACAGTCGGATCTAGTGACATGGGTATCTCCAAAACTTACTGAAAAAGATTTGAAGCAGTGTATTGACACTAGATTGAATGGAGATTATCCTCCCAACGCAGCCGTAAAGATGGCTACCATTGCGGCCTTGTGCGTGAAATATGAGGCTAAATCCCGACCGCAAATGTGCCTGGTAGTTGAACGCCTCCAAACTCTTTAA

Network for GWHGAAZE021649

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	1	74	1.30E-07
PF07714.18	PK_Tyr_Ser-Thr	259	529	4.80E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.086
	SRR3591706	second leaf	0.119
	SRR3591707	mature leaf	0.396
	SRR3591708	Shoot apex	0.089
	SRR3591709	Stem	0.061
	SRR3591710	White floral bud	0.338
	SRR3591711	White flower	0.174
	SRR3591712	Green floral bud	0.864
	SRR3591713	Yellow flower	0.237
SRP173429	SRR8316895	Juvenile bud stage	0.697
	SRR8316896	Juvenile bud stage	1.924
	SRR8316897	Juvenile bud stage	0.639
	SRR8316894	Third green stage	0.616
	SRR8316900	Third green stage	0.390
	SRR8316901	Third green stage	0.586
	SRR8316898	Complete white stage	0.369
	SRR8316899	Complete white stage	1.416
	SRR8316903	Complete white stage	0.209
	SRR8316902	Silver flowering stage	0.158
	SRR8316904	Silver flowering stage	0.226
	SRR8316905	Silver flowering stage	0.098
	SRR8316906	Gold flowering stage	0.455
	SRR8316907	Gold flowering stage	0.209
	SRR8316908	Gold flowering stage	0.305
SRP132670	SRR6706286	Control	0.862
	SRR6706287	Light intensity 50%	0.672
	SRR6706288	Light intensity 20%	0.339
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.231
	CNS0095593	Slightly white alabastrum(diploid) 2	0.341
	CNS0095594	Slightly white alabastrum(diploid) 3	0.119
	CNS0095595	Whole white alabastrum(diploid) 2	0.102
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.222
	CNS0095598	Silvery flower (diploied) 1	0.261
	CNS0095599	Silvery flower (diploied) 2	0.653
	CNS0095600	Silvery flower (diploied) 3	0.332
	CNS0095601	Golden flower (diploid) 1	0.328
	CNS0095602	Golden flower (diploid) 2	0.205
	CNS0095603	Golden flower (diploid) 3	0.277
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.083
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.055
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.062
	CNS0095610	Silvery flower (tetraploid) 1	0.012
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.138
	CNS0095613	Golden flower (tetraploid) 1	0.012
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.007
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.182
	CRR073301	Leaf 2	0.226
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.065
	CRR073304	Juvenile bud 2	0.087
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.168
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.383
	CRR073317	Gold flowering 3	0.090
	CRR073318	Tawny withering 1	0.719
	CRR073319	Tawny withering 2	0.343
	CRR073320	Tawny withering 3	0.169