Gene detail

Detail information of GWHGAAZE021647

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABK94423.1	2.73301E-86	unknown [Populus trichocarpa]
COG	YP_001958461.1	7E-17	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	6E-72	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A9PDH0\|A9PDH0_POPTR	1E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK94423.1}
TAIR10	AT3G51550.1	3E-66	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58826237	58835027	+
GWHAAZE00000006	mRNA	58826237	58835027	+
GWHAAZE00000006	exon	58826237	58826816	+
GWHAAZE00000006	exon	58826948	58827310	+
GWHAAZE00000006	exon	58832291	58832544	+
GWHAAZE00000006	exon	58832649	58832775	+
GWHAAZE00000006	exon	58833596	58833831	+
GWHAAZE00000006	exon	58834654	58834743	+
GWHAAZE00000006	exon	58834917	58835027	+
GWHAAZE00000006	CDS	58826237	58826816	+
GWHAAZE00000006	CDS	58826948	58827310	+
GWHAAZE00000006	CDS	58832291	58832544	+
GWHAAZE00000006	CDS	58832649	58832775	+
GWHAAZE00000006	CDS	58833596	58833831	+
GWHAAZE00000006	CDS	58834654	58834743	+
GWHAAZE00000006	CDS	58834917	58835027	+

Transcript Sequence
>GWHTAAZE021671 ATGCCGTCGCTTTATGAATCAAATTCCGGAAAGAAATTCAATGTATCGGAAGAGCCATGCCCTCGATTTTCTCTTGCTGACATCGAGAAGGCCACAAATAATTTCACTTCAATGGTCATCGGCCAGGGGGGGTTTGCGAAGGTTTACAAAGGAGAAATTCAAATTATTAATGGGGGGGCTAATAGTACTACTGTTGCCATTAAACGAATGAGTTCTATGTCCCCCGAGTCTAGGAAAGAGTTTCAGCAAGATATTTCGATGGTGTACAAATTTCGACATAGTAACCTCGTCTCTCTCCTTGGTTACTGTGAGACCGACACGGAAATGATCCTCGTTTATGAATATATGGGTGGTGGAACTCTCAAAGATGCTTTGCGTAGAAGTGGCAATAATAATGTTCCTCTAAGTTGGGTCGAACGCCTTAAGATATGTGTTAGTGCTGCTCGAGGGTTACACTACCTTCATACTGGTACTAGTAACAAGCACAAAATCATTCATCGCGATGTCAAGAGTTCTAATATATTGTTGGATGAGAATCCGGAAATAGCTAAAATTTCAGATTTTGGGTTGTCAAAAATAGTTGTGCTATTTGAATTGTTGTGTGGGAGGCCTGCCTTGGATTTCACACTCCATCAGGACCAATGGAACTTAGCTGGGTGGGCGCACCAATGCGTTGAAAAAAAGAAAGTTAAGCAACTTGTCGATCCCAACTTGAACTCACAAATCTTACCGAGTAGTTTGTCGGCATTTGTGAAAGTTGCGGACCGATGCTTGCATGCTCGTCCAACAGAACGCCCTACAATGACTGAGGTACTAGCTGAGCTTGAGCGTGCTTTGAAATTACAAGGAAGCGGAAAAGTTGCCACAGGATTCCATGTTGGGAGAAGGAAATACGCGAAAAAGTGGCAGCTGTTGTTTTCCGTCACACATCGGCCAATATCAGATAACAATGCAGATTACTCTGCCACTGAGGTTGTGCCAGCTGATCACACGCATAATACAAAGATCAACACCATTGATGTCCCTTCGATTGAGGTGGACGAGTTGGGGGAAATAACAGATAACTTTGGTATAAGAGCATTTATTTGCGAGGGCTCGTGTGGAAAATTATACATAGGTATCCTGAAAAGTGGACAGGCTGCATGCATAAAAAGCTTTGATTCCAGTTTGCTACCAATAAGTGAATTTTTAGGACAGGTTTGCATGATGCCAAGGCTTAAACATGAAAATTTCCTTAAGCTACTTAGTTATTGTGTGAATGGTGATCACTGTTTCCTTGTGTATGAGTATGCTTCACAGGGATCTCTTCATGATATTCTTCACGGATGGAAAGTTGTTAGAGGCGCCCAACAATGTCAAGTACTATCATGGACCCAAAGAGTTAGAATTGCTATTGGAGCAGCAAAAGGACTTGAATACTTGCATGAAGAGGCCAATATTACCCATCGTAATATTAATTCCTGGAATGTTTTACTTTTTAGAGGCGATGTTGTAAAGATAGCGGATCTTAATTTGTCAAATCAAGCCCCTGATGTGTCAGAATGTCTTATTTCCGCGGACGCAACCCCAAAGCTCAGCAATGATAAAGTGAAGCAGTGTATTGACCCTGGATTGAGTGGAGAATTCCATCCCAGACAAGCTGCAAAAGTAATGGCTGCCGTTGCAGTCTTGTGCTTGCAAGCTGAAGCTGATTTGCGTCCGAAAATGAGCACTGTAGCTAAATCCCTCCAGAGTCTGCTGAATGCTTTACCTCAACCATAA

Network for GWHGAAZE021647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	39	193	4.40E-34
PF07714.18	PK_Tyr_Ser-Thr	362	509	7.70E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.728
	SRR3591706	second leaf	3.203
	SRR3591707	mature leaf	5.588
	SRR3591708	Shoot apex	5.180
	SRR3591709	Stem	8.694
	SRR3591710	White floral bud	4.871
	SRR3591711	White flower	8.168
	SRR3591712	Green floral bud	5.485
	SRR3591713	Yellow flower	3.842
SRP173429	SRR8316895	Juvenile bud stage	2.382
	SRR8316896	Juvenile bud stage	3.370
	SRR8316897	Juvenile bud stage	0.509
	SRR8316894	Third green stage	1.814
	SRR8316900	Third green stage	4.585
	SRR8316901	Third green stage	5.586
	SRR8316898	Complete white stage	1.367
	SRR8316899	Complete white stage	5.569
	SRR8316903	Complete white stage	3.305
	SRR8316902	Silver flowering stage	2.245
	SRR8316904	Silver flowering stage	3.301
	SRR8316905	Silver flowering stage	1.115
	SRR8316906	Gold flowering stage	4.444
	SRR8316907	Gold flowering stage	5.137
	SRR8316908	Gold flowering stage	2.578
SRP132670	SRR6706286	Control	4.226
	SRR6706287	Light intensity 50%	3.872
	SRR6706288	Light intensity 20%	4.150
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.688
	CNS0095593	Slightly white alabastrum(diploid) 2	3.260
	CNS0095594	Slightly white alabastrum(diploid) 3	2.252
	CNS0095595	Whole white alabastrum(diploid) 2	2.273
	CNS0095596	Whole white alabastrum(diploid) 3	1.434
	CNS0095597	Whole white alabastrum(diploid) 4	2.579
	CNS0095598	Silvery flower (diploied) 1	3.539
	CNS0095599	Silvery flower (diploied) 2	2.427
	CNS0095600	Silvery flower (diploied) 3	2.235
	CNS0095601	Golden flower (diploid) 1	3.598
	CNS0095602	Golden flower (diploid) 2	2.649
	CNS0095603	Golden flower (diploid) 3	2.332
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.630
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.631
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.876
	CNS0095610	Silvery flower (tetraploid) 1	3.822
	CNS0095611	Silvery flower (tetraploid) 2	3.279
	CNS0095612	Silvery flower (tetraploid) 3	3.318
	CNS0095613	Golden flower (tetraploid) 1	1.252
	CNS0095614	Golden flower (tetraploid) 2	2.599
	CNS0095615	Golden flower (tetraploid) 3	2.100
CRA001975	CRR073297	Stem 1	3.288
	CRR073298	Stem 2	3.062
	CRR073299	Stem 3	1.276
	CRR073300	Leaf 1	4.517
	CRR073301	Leaf 2	3.936
	CRR073302	Leaf 3	2.674
	CRR073303	Juvenile bud 1	0.963
	CRR073304	Juvenile bud 2	0.835
	CRR073305	Juvenile bud 3	2.124
	CRR073306	Third green 1	0.256
	CRR073307	Third green 2	0.305
	CRR073308	Third green 3	0.090
	CRR073309	Second white 1	0.110
	CRR073310	Second white 2	0.206
	CRR073311	Second white 3	0.192
	CRR073312	Silver flowering 1	0.571
	CRR073313	Silver flowering 2	0.148
	CRR073314	Silver flowering 3	0.343
	CRR073315	Gold flowering 1	1.538
	CRR073316	Gold flowering 2	3.127
	CRR073317	Gold flowering 3	1.083
	CRR073318	Tawny withering 1	2.154
	CRR073319	Tawny withering 2	1.193
	CRR073320	Tawny withering 3	1.020