Gene detail

Detail information of GWHGAAZE021642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	5.2385E-130	unnamed protein product [Coffea canephora]
COG	YP_004696643.1	2E-25	serine/threonine protein kinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-113	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-130	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	3E-96	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58754611	58757095	+
GWHAAZE00000006	mRNA	58754611	58757095	+
GWHAAZE00000006	exon	58754611	58755664	+
GWHAAZE00000006	exon	58756576	58756871	+
GWHAAZE00000006	exon	58756961	58757095	+
GWHAAZE00000006	CDS	58754611	58755664	+
GWHAAZE00000006	CDS	58756576	58756871	+
GWHAAZE00000006	CDS	58756961	58757095	+

Transcript Sequence
>GWHTAAZE021666 ATGTGGGCGCTTCAGGAATCAAAATCCGGTGAGAAATTTGACCCATCTTCTTCATTGTCATTGGAAAATCTATCCCGTCGGTTTTCACTTGATGAGATCTTAGCGGCCACAAATGATTTTGATGATTCTATGGTCATTGGCCAAGGGGGGTTCGCAAAGGTTTACAAAGGGGAAATTGATAATGGGGCTCATACTGTTGCCATAAAGCGAATGAAGCCTATGTTCAAAGAAGGCGCGCCTGAGTTTCGGACCGAGATTTTGATGGTGTCCAAATTTCGACACAGTCACCTGGTGTCCCTCATTGGTTACTGTGAGAGTGAAAATGAAATGATCCTTGTTTACGAATTTATGGCCCGTGGAACTCTAGAAGATAATTTGCATAAAATTGGTACAAGTGAAAATAACAATGTTCCTCTAAGTTGGGTCCAACGCCTTAAGATATGTATTGGTGCTGCAAGGGGGTTAGAGTACCTTCATACCGGTACTGGTATCCAGCACAGAGTCATTCATCGCGACGTTAAGAGTTCAAATATATTGTTGGACGAGAACTGGGCAGCTAAAATCTCAGATTTTGGGATGTCAAAAATAGGTCCAGCAAACCAGTCAGACACCCATGTTAGCACCCGAATTGTAGGCACATTTGGTTATTTGGATCCAGATTACGCTTTCACTGGTAGCCTCACTAGGAAATCCGATGTGTACTCATTTGGGGTTGTACTATTTGAAGTGTTGTGTGGGAGACTGGCCTTGGATCGAACACTTCCTGAGGACCAATGGGGTTTAGCTGGGTGGGCGCACTACTGCGTCAGAAAAGGAATAGTTAAGCAAATTATTGATCCCAATTTGAAGTCGCAAATCGTGCCGCGTAGTTTGCTGGCATTTGTGAAAGTTGCTGACCGATGCTTGCATGCTCGTCCAAAAGAACGCCCCACAATGACTGAGGTTCTGGCTGATCTTGAGCTTGCTTTGAATTTACAAGAGAGCACAAAAGTTGCCAGTGGATTCGCAGAAAAGTTTCGGCAGTTGTTTCTGGTCACACCTCGGCCAATATCAGGTAATAATCTAGTTTATCATGCCACAGAGGCTGCACCAACTCAAACAGAGGCGGTGCCAAAAAACACAGTGGCTGCGTCAATTGACAGGCAGGCTGTAAACATTGAGCCTATTGCCGTCCCTTCTGTTCAGCTGGATGAGTTGCGGGACATAACAGACAACTTTGGTACAAAAGCTTTGATTTATGAGGGGAATTATGGAAGATTATACAAGGGGATATTGAAAAGTGGGCGGGCTTCATGCATCAAAAAGTTAGAAATCAATGACGACCTTCCAGATCAAATTTTTTTAACACAGGTTTTGATGGCATCAAGACTTAAACATGAAAACGTGGTTGAGCTACTTAGTTATTGCGTGGATGGTGGCCTCCGTGTCCTTGCCTATGAGTATGCTTCGAATGGATCACTTCACGACATTCTTCATGGTAAGTAA

Network for GWHGAAZE021642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	45	318	1.60E-44
PF07714.18	PK_Tyr_Ser-Thr	412	493	4.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.428
	SRR3591706	second leaf	0.630
	SRR3591707	mature leaf	0.165
	SRR3591708	Shoot apex	1.177
	SRR3591709	Stem	0.372
	SRR3591710	White floral bud	0.491
	SRR3591711	White flower	0.352
	SRR3591712	Green floral bud	0.526
	SRR3591713	Yellow flower	0.213
SRP173429	SRR8316895	Juvenile bud stage	0.377
	SRR8316896	Juvenile bud stage	0.475
	SRR8316897	Juvenile bud stage	0.186
	SRR8316894	Third green stage	0.381
	SRR8316900	Third green stage	0.503
	SRR8316901	Third green stage	0.227
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.860
	SRR8316903	Complete white stage	0.264
	SRR8316902	Silver flowering stage	0.198
	SRR8316904	Silver flowering stage	0.023
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.284
	SRR8316907	Gold flowering stage	0.447
	SRR8316908	Gold flowering stage	0.423
SRP132670	SRR6706286	Control	1.072
	SRR6706287	Light intensity 50%	0.887
	SRR6706288	Light intensity 20%	0.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.535
	CNS0095593	Slightly white alabastrum(diploid) 2	0.149
	CNS0095594	Slightly white alabastrum(diploid) 3	0.192
	CNS0095595	Whole white alabastrum(diploid) 2	0.114
	CNS0095596	Whole white alabastrum(diploid) 3	0.189
	CNS0095597	Whole white alabastrum(diploid) 4	0.206
	CNS0095598	Silvery flower (diploied) 1	1.135
	CNS0095599	Silvery flower (diploied) 2	0.952
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.702
	CNS0095602	Golden flower (diploid) 2	0.487
	CNS0095603	Golden flower (diploid) 3	0.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.204
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.219
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.711
	CNS0095610	Silvery flower (tetraploid) 1	0.123
	CNS0095611	Silvery flower (tetraploid) 2	0.499
	CNS0095612	Silvery flower (tetraploid) 3	0.537
	CNS0095613	Golden flower (tetraploid) 1	0.056
	CNS0095614	Golden flower (tetraploid) 2	0.377
	CNS0095615	Golden flower (tetraploid) 3	0.261
CRA001975	CRR073297	Stem 1	1.315
	CRR073298	Stem 2	1.131
	CRR073299	Stem 3	0.162
	CRR073300	Leaf 1	0.722
	CRR073301	Leaf 2	0.613
	CRR073302	Leaf 3	0.130
	CRR073303	Juvenile bud 1	0.066
	CRR073304	Juvenile bud 2	0.033
	CRR073305	Juvenile bud 3	0.112
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.006
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.060
	CRR073317	Gold flowering 3	0.012
	CRR073318	Tawny withering 1	0.067
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	0.078