Gene detail

Detail information of GWHGAAZE021637

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099165.1	3.9855E-104	PREDICTED: receptor-like protein kinase FERONIA [Sesamum indicum]
COG	YP_008151634.1	1E-20	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9FID8\|Y5900_ARATH	8E-93	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|A0A022RZ14\|A0A022RZ14_ERYGU	3E-104	Uncharacterized protein {ECO:0000313\|EMBL:EYU44215.1}
TAIR10	AT5G39000.1	1E-81	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58678070	58681260	-
GWHAAZE00000006	mRNA	58678070	58681260	-
GWHAAZE00000006	exon	58678070	58679013	-
GWHAAZE00000006	exon	58679840	58679927	-
GWHAAZE00000006	exon	58680007	58681260	-
GWHAAZE00000006	CDS	58680007	58681260	-
GWHAAZE00000006	CDS	58679840	58679927	-
GWHAAZE00000006	CDS	58678070	58679013	-

Transcript Sequence
>GWHTAAZE021661 ATGTTCAGTATCCCGTCGAAGTACTTAAGCCGTCGCTTTTCACTAGATGAGATTCTATTGGCAACCAACAATTTTGACGATTCCATGGTTATAGGCAAGGGTGGGTTTGGCAAGGTTTACAAAGGCAATATCATTTCTAATAATGATAGTGGCTCATCATCATCATCATCAACTACTACTGTTGCTATTAAGCGTTTGAATCCCTCGTCCAAGCAAGGTGCCCCTCAGTTTTGGACTGAGATTAATATGCTTTCTAAGTTTCAACACAGCCACCTCGTTTCTTTGATTGGGTACTGTGATAATTGTAACGAAATGATCCTTGTCTATGAGTATATGGTCCGTGGATCTCTAGCTGATCATGTGCAGAGAAAGAACCATAACGGTAATAGTTTACCTTTATCTTGGGTTCAACGCCTGAAAATATGTATAGGGGCTGCTCGTGGATTGGACTATCTGCATACTGGTACGGCCATCCGAAAGAGAGTCATACATCTAGATGTGAAAAGCTCAAACATTCTGTTGGATAAGAATTGGGCAGCTAAGATCTCAGATTTTGGATTGTCTAGAATTGGTCCCGCGGAACAAGAATGCACCCATGTTAGCACTACTCACATCAGAGGCACAAGGGGTTACATAGATCCCAATTATTTGCTTACTCACAGATTCACGAGGAAATCAGATGTGTACGCGTTTGGGGTGGTATTGTTGGAAGTACTCTGCGAGAGGCCGGCTTTGGATCGCAGCCTCGATCAGGACCAATGGGGTCTTGCTGGATGGGGCCAACAGTGCATCAAAGAAGGAGCATCACATAAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTTTCAAATTCTTTGAGGGAATTTGTGCAAATTGCGGATCAATGCTTGCATAATTGTCCAAAGCAACGTCCTACAATGTCTGAGGTGGTGGCGAAACTTGAGCTTGCATTGGCATCGCAACTGCACAGAGATCCGCTGACCAAGGAGTATGTCTTTGATAATTTTTTGCCTGTTAACAACCAAGAAAATCCGGTGTCTTATCAGGAGGATGACCATATTGATAAGGTTCTACAGCTAGGTGATTCAAGCAGCAAACAGATTTCCCCAGCCGGAGAGAATGCAGATTCGATGAAAATTTTACAAAGGAAACAGAAGAAAGGGCACCGCGACGTGGAGCTTCTCTCTCCCATCCCCAAACCTTCCACCGAGGAGCCCAAAGCAGAGGAGAAAGAAACAGAGAAGAAAGAGGAGCCTCAAGTTCTAACGGTGGTTCTAAAAGTATATATGCATTGTGAGGCTTGTGCTCAAGAACTCAAAAAATGTATAAAGAAAACCAAAGATCTAAAAGGTTCACAAGTGACGGTGAAAGGTGTGTTCGATCCGGAGCAACTGGTGAAATACGTGTACAAGCAAACACACAAACGCGCAGTGATTGTGAAGCCAGACCCCGAGAATAAGAAAGAAGAAGACAAGGGCAAAGAAGAGAAGAAAGCCGAAGAACCCGCCTCCGTGGAAAAGAAAACGCTAACAGGCAAGCACACAGTTACAGTGAAGCCAAACACTGATAATAAGAAAGAAGACGACAAGGGCAAAGAAGAGAAGAAAACCGAAGAACCTGCCATTGTGAAGCCAAACCCCGAGAATAAGAAAGAAGAAAAGGGCAAAGAAGAGAAGAAAACCGAAGAAGCCGCTGCGGCTGAAAATAAAAAGGCAAACAGCAAACACGCAGCTATTGTGAAGCCAGACCCCAAAGGAGAGAAGAAAGCCGAAGAACTCGCCACCACTGGGAAGAAAAAGCGAACAGGCAAACACGGAGCTATTGTGAAGCCAGACCCCGAGAATAAGAAAGAAGAAGACAAGGGCAACAAAGAAAAGAAAGCCAAAGATCAAACTGAAAAGAAAAGGCGAACAAGCAAACACACTGCTATTGTGAAGCCAGATCCTGAGAATAAGAATGTAGAAAACAAGGGCAAGGAAGAGAAGAAAGCCGAAGAACCCGCTGCAGCTGAAAAGAAAAGGCGAACAGGCGAACACGCAGCTATTGTGAAGCCAGATCCCGAGAATAAGAAAGAAGACGACAAGGCAAAAGAAGAGAAGAAAGCCGAAGAACCCGGTACCGCAGGAAAAAAAGGAGGCAAGGCGGAGGAGAAGAAAGAAGGTGGTGGAGAATATTACCAAATTGACCATCAGAGGTTTACCTCCGAAATGCGTTTGCTCGACCAGATGCTTCAACAGTGCGAATTGTTCAGTGATGAGAATCCAAATTCATGTTCAGTTATGTAA

Network for GWHGAAZE021637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	30	314	9.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0030001	biological_process	metal ion transport
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.049
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.109
	SRR3591708	Shoot apex	0.172
	SRR3591709	Stem	0.035
	SRR3591710	White floral bud	0.103
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.047
	SRR3591713	Yellow flower	0.057
SRP173429	SRR8316895	Juvenile bud stage	2.563
	SRR8316896	Juvenile bud stage	3.102
	SRR8316897	Juvenile bud stage	0.023
	SRR8316894	Third green stage	0.388
	SRR8316900	Third green stage	0.597
	SRR8316901	Third green stage	1.888
	SRR8316898	Complete white stage	0.073
	SRR8316899	Complete white stage	1.575
	SRR8316903	Complete white stage	0.032
	SRR8316902	Silver flowering stage	0.139
	SRR8316904	Silver flowering stage	0.301
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.476
	SRR8316907	Gold flowering stage	0.388
	SRR8316908	Gold flowering stage	0.272
SRP132670	SRR6706286	Control	2.227
	SRR6706287	Light intensity 50%	1.370
	SRR6706288	Light intensity 20%	0.767
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.400
	CNS0095593	Slightly white alabastrum(diploid) 2	2.646
	CNS0095594	Slightly white alabastrum(diploid) 3	4.265
	CNS0095595	Whole white alabastrum(diploid) 2	1.771
	CNS0095596	Whole white alabastrum(diploid) 3	0.446
	CNS0095597	Whole white alabastrum(diploid) 4	0.757
	CNS0095598	Silvery flower (diploied) 1	0.868
	CNS0095599	Silvery flower (diploied) 2	1.875
	CNS0095600	Silvery flower (diploied) 3	0.649
	CNS0095601	Golden flower (diploid) 1	1.948
	CNS0095602	Golden flower (diploid) 2	0.887
	CNS0095603	Golden flower (diploid) 3	1.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.624
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.386
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.590
	CNS0095610	Silvery flower (tetraploid) 1	0.228
	CNS0095611	Silvery flower (tetraploid) 2	0.276
	CNS0095612	Silvery flower (tetraploid) 3	0.098
	CNS0095613	Golden flower (tetraploid) 1	0.083
	CNS0095614	Golden flower (tetraploid) 2	0.009
	CNS0095615	Golden flower (tetraploid) 3	0.053
CRA001975	CRR073297	Stem 1	1.726
	CRR073298	Stem 2	2.718
	CRR073299	Stem 3	1.458
	CRR073300	Leaf 1	3.149
	CRR073301	Leaf 2	4.813
	CRR073302	Leaf 3	1.356
	CRR073303	Juvenile bud 1	1.187
	CRR073304	Juvenile bud 2	1.105
	CRR073305	Juvenile bud 3	3.237
	CRR073306	Third green 1	0.026
	CRR073307	Third green 2	0.122
	CRR073308	Third green 3	0.095
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.060
	CRR073311	Second white 3	0.165
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.178
	CRR073316	Gold flowering 2	0.598
	CRR073317	Gold flowering 3	0.276
	CRR073318	Tawny withering 1	0.635
	CRR073319	Tawny withering 2	0.745
	CRR073320	Tawny withering 3	0.028