Gene detail

Detail information of GWHGAAZE021635

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792374.1	1.7666E-126	PREDICTED: probable serine/threonine-protein kinase NAK isoform X2 [Nicotiana sylvestris]
COG	YP_001958461.1	3E-17	hypothetical protein Aasi_1443
Swissprot	tr\|P27450\|CX32_ARATH	4E-106	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	4E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	3E-97	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58611755	58621234	-
GWHAAZE00000006	mRNA	58611755	58621234	-
GWHAAZE00000006	exon	58620781	58621234	-
GWHAAZE00000006	exon	58620112	58620531	-
GWHAAZE00000006	exon	58618898	58619229	-
GWHAAZE00000006	exon	58616691	58616829	-
GWHAAZE00000006	exon	58616449	58616582	-
GWHAAZE00000006	exon	58616247	58616370	-
GWHAAZE00000006	exon	58613724	58614071	-
GWHAAZE00000006	exon	58612413	58612465	-
GWHAAZE00000006	exon	58612228	58612263	-
GWHAAZE00000006	exon	58611755	58612024	-
GWHAAZE00000006	CDS	58620781	58621234	-
GWHAAZE00000006	CDS	58620112	58620531	-
GWHAAZE00000006	CDS	58618898	58619229	-
GWHAAZE00000006	CDS	58616691	58616829	-
GWHAAZE00000006	CDS	58616449	58616582	-
GWHAAZE00000006	CDS	58616247	58616370	-
GWHAAZE00000006	CDS	58613724	58614071	-
GWHAAZE00000006	CDS	58612413	58612465	-
GWHAAZE00000006	CDS	58612228	58612263	-
GWHAAZE00000006	CDS	58611755	58612024	-

Transcript Sequence
>GWHTAAZE021659 ATGTTCAGCCCCCCTTCAGAGAACTTATGCCGCCACTTTTCACTCGATGAGATCCTGTCGGCGACCAACAATTTCGACGATTCACTGGTTATTGGGAAGGGGGGATTCGGTAATGTTTACAAAGGGATGATTGATAATGGAGCATGTACTGTTGCTATTAAGCGTTTGAATCCCCTGTCCAAGCAAGGTGCCCCTGAGTTTTGGACTGAGATTACTATGCTTTCAAATTTTCGACATAGCCACCTTGTTTCTTTGATCGGGTACTGCGATCATTATAACGAGATGATCCTTGTCTACGACTATATGGTTCGTGGAACCCTAGCGGACCATTTGTACAAAATTAGTAAAAATAACAGTGATTATAATAATATTGGTAACAATTTACCTTTGTCTTGGGTGCAACGTCTCAACATATGTATAGGGGCTGCTCGTGGATTGGACTACCTCCATACTGTACTCTGCGAGAGGCCGGCTCTGGATCGAAGCCTCGATGAGGACCAATGGAGTCTTGCTGGATGGGGCCAGCAGTGCATCAAAGAAGGAGCATCGACTCAGATTATTGGGCCGAATTTGAAGGGGGAAATCATGCCAAATTCTTTGATGGAATTTGTCCAAATTGTGGATCAATGCTTGCATAATCGGCCAAAGAAACGTCCTACAATGTCGGGGGTGGTGGCCAGACTGGAGCTTGCATTGGCATTGCAGCTGCACACCAATTTTGTCACCGACAAGCATTTGTTTGGTACTTGCTTGCCTGTTAACAACCAAGAAAATGGGGATTCTTATCCGGAGGACAACCATATTAATAAAGTTGTACAGGTACATGATTCAAGCAGCGGACAGTTTTTCCAACTCGGAGCTCCAGTAGTCTCGGTACATAGTGATGCAAAACCTTCAAGTAACACTAAAAGCAACAACGACAACGGCCATAATAGCACATTGCCCAACAAAGATGGAGGCATCGTCCAGGATGTGCCTACAAGTTGGGAAATTGTGAATCCAAATTTGAAAATTTTCACATTCGCTGAATTAAAAAGCGCAACTGAGAACTTCACATTGGATGTGTTGGGCAAAGGAGGTTTTGGAATTGTTTTCAAAAGTTGGGTCAATGAGAAGACATATTCCCCGTCGAAGGTTGGTGATGGGAAAGCCGTTGCCGTTAAGAGGTTAGGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGATGGAGGTGGGAATTTTGGGAAACTTTAGACATCCTGATATTGTGAAGCTCTTGGGGTACTACTGTGGGGAAGACAAGGAATTCCTCCTAGTTTATGAATACATGCAGAATGGAAGCTTAGATCGCCACCTTTTTGGCAGTGCAACGTCACTTCCATGGGACACACGGCTTAAAATAGCAATAGGAGCAGCTCGAGGCCTTTCTTTCCTGCATGCAACAAAGAATCAAGTCATAGTCCGTGACGTTAAGGCCTCGACTATATTGCTGGATGAGGATTTTAATGCAAAACTTTCGGGTTTTGGATTTGCAAAGAGAGATCCCAAAAACGGGGAGTCCCACTTTTCAACAGGAGTTATCGGTACCTATGGTTATGCAGCTCCGGAGTATGTAGCCACTGGACATTTGTATCTGAAGAGCGACGTCTATGGTTTTGGAGTGGTGTTGCTTGAAATACTAACAGGGCTAAGGGTGCATGATATGCGAAGGACCGAAAAGATTAATTTGGTGGAATGGGCCAAGCCTTTGCTGCATTGCAAAAAGAAGCTGAAGAGAGAAGTAGTGGATCCAAATCTGAAAAATGATTACCCGCTACAAAGAGCCTTCGAATTGGCTTCCCTGATACTAAAATGTCTTCAAAATAACCACAAAGTCCGACCTTCAATGAAAAGAGTATTGCAGAGTTTAGAACATATTAACTCCAAGGGTGGAAGCGGCTCAGGCCAGGCATCCTACGGTTCCAAGAGAGACCAACTAAGTGCCGGTGATCTAAGGCTGAACGGCTTCCACCATCTGGTTGTTGAGGCCAAGGACAAAGTTCTTAAGCTCATGCGAGAGGATCAGCACAGGAAGGAACTAAAAGACTCTTTTGACAATGGCTATAAAGATGCTATCGTTGCGGTTGCTAAAGAAATGCAGACCATTAAGCATCAAATTTATCATGTGGGTTATGACCAAGGCCTCGAAGCTATTCAAATTCCCATTGGACATGACCTGTTCAAGGCTCGTGTCAGCTACCCGAACAAGCTTTTCAATGCTGTAACCGTGGAGGAAGCTCGAGTAGGGGTGGCCCAACACATTTTTTTTTTTGTAGTCAATGGGCCGTAA

Network for GWHGAAZE021635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	30	152	3.90E-18
PF07714.18	PK_Tyr_Ser-Thr	354	630	4.30E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.128
	SRR3591706	second leaf	6.476
	SRR3591707	mature leaf	10.046
	SRR3591708	Shoot apex	7.736
	SRR3591709	Stem	14.858
	SRR3591710	White floral bud	15.499
	SRR3591711	White flower	23.606
	SRR3591712	Green floral bud	15.051
	SRR3591713	Yellow flower	21.182
SRP173429	SRR8316895	Juvenile bud stage	27.843
	SRR8316896	Juvenile bud stage	37.183
	SRR8316897	Juvenile bud stage	7.280
	SRR8316894	Third green stage	6.428
	SRR8316900	Third green stage	13.506
	SRR8316901	Third green stage	17.996
	SRR8316898	Complete white stage	5.751
	SRR8316899	Complete white stage	34.654
	SRR8316903	Complete white stage	10.633
	SRR8316902	Silver flowering stage	9.008
	SRR8316904	Silver flowering stage	9.731
	SRR8316905	Silver flowering stage	5.219
	SRR8316906	Gold flowering stage	21.430
	SRR8316907	Gold flowering stage	16.891
	SRR8316908	Gold flowering stage	13.597
SRP132670	SRR6706286	Control	20.005
	SRR6706287	Light intensity 50%	19.785
	SRR6706288	Light intensity 20%	20.533
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.591
	CNS0095593	Slightly white alabastrum(diploid) 2	26.590
	CNS0095594	Slightly white alabastrum(diploid) 3	27.350
	CNS0095595	Whole white alabastrum(diploid) 2	23.208
	CNS0095596	Whole white alabastrum(diploid) 3	6.095
	CNS0095597	Whole white alabastrum(diploid) 4	12.709
	CNS0095598	Silvery flower (diploied) 1	18.705
	CNS0095599	Silvery flower (diploied) 2	26.503
	CNS0095600	Silvery flower (diploied) 3	23.030
	CNS0095601	Golden flower (diploid) 1	31.172
	CNS0095602	Golden flower (diploid) 2	37.722
	CNS0095603	Golden flower (diploid) 3	37.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.304
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.805
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.875
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.439
	CNS0095610	Silvery flower (tetraploid) 1	19.836
	CNS0095611	Silvery flower (tetraploid) 2	14.358
	CNS0095612	Silvery flower (tetraploid) 3	11.411
	CNS0095613	Golden flower (tetraploid) 1	10.297
	CNS0095614	Golden flower (tetraploid) 2	15.482
	CNS0095615	Golden flower (tetraploid) 3	13.184
CRA001975	CRR073297	Stem 1	19.644
	CRR073298	Stem 2	15.161
	CRR073299	Stem 3	9.615
	CRR073300	Leaf 1	17.178
	CRR073301	Leaf 2	18.350
	CRR073302	Leaf 3	13.592
	CRR073303	Juvenile bud 1	14.036
	CRR073304	Juvenile bud 2	6.745
	CRR073305	Juvenile bud 3	16.203
	CRR073306	Third green 1	5.021
	CRR073307	Third green 2	4.607
	CRR073308	Third green 3	5.692
	CRR073309	Second white 1	3.931
	CRR073310	Second white 2	5.003
	CRR073311	Second white 3	4.373
	CRR073312	Silver flowering 1	8.494
	CRR073313	Silver flowering 2	9.155
	CRR073314	Silver flowering 3	6.484
	CRR073315	Gold flowering 1	10.313
	CRR073316	Gold flowering 2	26.425
	CRR073317	Gold flowering 3	8.636
	CRR073318	Tawny withering 1	24.654
	CRR073319	Tawny withering 2	33.662
	CRR073320	Tawny withering 3	20.768